>CFH502 (CFH502Q) /CSM/CF/CFH5-A/CFH502Q.Seq.d/
ATATNGTTTTACATCTTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
XXXXXXXXXXACTTTAATTAAAACCATCGTCAATNATGGTCCAGTAANTATTTGTGTTNA
NGCTTCAACANGGCAATCCTATTNTGGTGGTATTATTACAACTGGNTGTGGTAAAAACAT
TGATCATTNTGTTCAAGTAGTTGGTTTANA

ixfyiff*iyiyyi*ypiiyl**ff*LKKKSLICFNIKKK---

---TLIKTIVNXGPVXICVXASTXQSYXGGIITTGCGKNIDHXVQVVGL

Frame A:
ixfyiff*iyiyyi*ypiiyl**ff*LKKKSLICFNIKKK---

---TLIKTIVNXGPVXICVXASTXQSYXGGIITTGCGKNIDHXVQVVGL

Frame B:
yxftsffkyistisniqlfiynnffn*krnh*fvli*kk---

---l*lkpssxmvq*xfvxxlqxgnpixvvllqlxvvktliixfk*lvx

Frame C:
xvlhlflniyllylisnylsiiiflikkeiinlf*ykkk---

---fn*nhrqxwssxylcxxfnxailxwwyyynwxw*kh*sxcssswfx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL745 (SSL745Q) /CSM/SS/SSL7-B/SSL745Q.Seq.d/                        226   1e-58
SSK693 (SSK693Q) /CSM/SS/SSK6-D/SSK693Q.Seq.d/                        226   1e-58
SSJ874 (SSJ874Q) /CSM/SS/SSJ8-D/SSJ874Q.Seq.d/                        226   1e-58
SSI455 (SSI455Q) /CSM/SS/SSI4-C/SSI455Q.Seq.d/                        226   1e-58
SSH895 (SSH895Q) /CSM/SS/SSH8-D/SSH895Q.Seq.d/                        226   1e-58
SSH864 (SSH864Q) /CSM/SS/SSH8-C/SSH864Q.Seq.d/                        226   1e-58
SSH449 (SSH449Q) /CSM/SS/SSH4-C/SSH449Q.Seq.d/                        226   1e-58
SSH105 (SSH105Q) /CSM/SS/SSH1-A/SSH105Q.Seq.d/                        226   1e-58
SSE774 (SSE774Q) /CSM/SS/SSE7-D/SSE774Q.Seq.d/                        226   1e-58
SSE224 (SSE224Q) /CSM/SS/SSE2-A/SSE224Q.Seq.d/                        226   1e-58

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   226   4e-84  5
AC022521|AC022521.4 Arabidopsis thaliana chromosome I BAC T14P4 genomic sequence, complete sequence.    38   0.16   4
AC138618|AC138618.5 Mus musculus BAC clone RP23-335D4 from chromosome 7, complete sequence.    46   0.24   1
AC121904|AC121904.2 Mus musculus chromosome 7 clone RP24-175O7, complete sequence.    46   0.24   1
AC147429|AC147429.5 Medicago truncatula clone mth2-24m22, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   0.42   2
AC147434|AC147434.4 Medicago truncatula clone mth2-28h7, WORKING DRAFT SEQUENCE, 7 unordered pieces.    44   0.43   2
AC005308|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    36   0.47   5
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    36   0.47   6
AQ439370|AQ439370.1 HS_5060_B1_H05_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=636 Col=9 Row=P, DNA sequence.    44   0.96   1
AC117441|AC117441.3 Homo sapiens 3 BAC RP11-803L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   0.96   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_19(AC116956|pid:none) Dictyostelium discoideum chromoso...    82   6e-15
EF538805_1(EF538805|pid:none) Trypanoplasma borreli cathepsin L ...    42   0.006
EF154432_1(EF154432|pid:none) Leptinotarsa decemlineata clone In...    41   0.014
L25130_1(L25130|pid:none) Trypanosoma congolense cysteine protea...    40   0.018
AM494945_81(AM494945|pid:none) Leishmania braziliensis chromosom...    40   0.024
AY850168_1(AY850168|pid:none) Cloning vector pQ-CPB recombinant ...    40   0.024
AM494945_83(AM494945|pid:none) Leishmania braziliensis chromosom...    40   0.024
DQ071678_1(DQ071678|pid:none) Leishmania aethiopica cysteine pro...    40   0.024
AM494945_82(AM494945|pid:none) Leishmania braziliensis chromosom...    40   0.024
AF228732_1(AF228732|pid:none) Stylonychia lemnae cathepsin L gen...    40   0.032

 psg: 0.77  gvh: 0.52  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFH502 is nuc

>CFH502F.Seq
ATATNGTTTTACATCTTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
NNNNNNNNNN

>CFH502Z.Seq
NNNNNNNNNNACTTTAATTAAAACCATCGTCAATNATGGTCCAGTAANTATTTGTGTTNA
NGCTTCAACANGGCAATCCTATTNTGGTGGTATTATTACAACTGGNTGTGGTAAAAACAT
TGATCATTNTGTTCAAGTAGTTGGTTTANA

>CFH502P.Seq
ATATNGTTTTACATCTTTTTTTAAATATATATCTACTATATCTAATATCCAATTATTTAT
CTATAATAATTTTTTTAATTAAAAAAGAAATCATTAATTTGTTTTAATATAAAAAAAAAA
----------ACTTTAATTAAAACCATCGTCAATNATGGTCCAGTAANTATTTGTGTTNA
NGCTTCAACANGGCAATCCTATTNTGGTGGTATTATTACAACTGGNTGTGGTAAAAACAT
TGATCATTNTGTTCAAGTAGTTGGTTTANA