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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH413
Library CF
(Link to library)
Clone ID CFH413
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15057-1
Original site URL
Representative seq. ID CFH413P
(Link to Original site)
Representative DNA sequence 
>CFH413 (CFH413Q) /CSM/CF/CFH4-A/CFH413Q.Seq.d/
ATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATAAATCTTGTAATTTATTTTTTT
CTTTTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCA
GCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCT
CAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGAC
ATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATG
ACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAG
ATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGA
CCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTT
GCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTC
ATTGATGATCATCXXXXXXXXXXTCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATT
AAAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGT
ATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTT
GAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAAT
GATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGT
AAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCA
GTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTC
AATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATGATGGTAAGGCAGTTGTCAATGCT
GGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAA
ACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCA
ATTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAA
GCAGCTGGTGATGTTGTTGAAGAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iiink*k*KNEIINLVIYFFLFGIVYSQPPQPHYGVFELSALRGGENKLLYRGANLKAFS
QTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMTQTPNNMATSGRIVSYAYQE
ISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLALLARWIRLNFSTNIQIIEF
IDDH---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNDGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVEE
Translated Amino Acid sequence (All Frames) 
Frame A:
iiink*k*KNEIINLVIYFFLFGIVYSQPPQPHYGVFELSALRGGENKLLYRGANLKAFS
QTPARPGVIVTFFRYNGGIDIYYSHRIQIVANLEESARVMTQTPNNMATSGRIVSYAYQE
ISTQVFNGLNVGNLNALINGPNLVTPAGPFIPHGRLINVLALLARWIRLNFSTNIQIIEF
IDDH---

---scriigis**ry*rgcqrc*shwckyle*sqkyfqpw*rscq**nkccrcks*k*r*
sscqsw*irckycek*w*gscqcwriccnlcek*r*gscqcw*ircnlckk*w*gscqcw
*ircnlcek*r*gscqcwwiccnlckk*w*gscqcw*nccsncekrslshcenw*ncy*f
hkkrrrcicf*rwccnc*y*kkwctickrccrng*ssw*cc*r

Frame B:
***isknkkmk**il*fifffle*yilnhhnhtmvylnyqhyvvekinfcigvpi*klfl
khqldqe*lllfsdtmevltftipigykllqilksqrv**pklqiiwllvvelfhmlikr
ylprfsmd*mlai*ml*smdpi**hqlghlfhmeg*lmslhfwrdgld*ifqqiykslns
lmii---

---PAGLLGLVSEGIKEAANGVKVTGVNIWNKAKSIFSHGKEAASSKTSAAVVKVENEGK
AVVKAGESVVSTVKNDGKAVVNAGESVVTSVKNEGKAVVNAGESVVTSVKNNGKAVVNAG
ESVVTSVKNEGKAVVNAGGSVVTSVKNDGKAVVNAGETVVQTVKKEASVIVKTGETVIDS
TRKGGAAFVSEGGAAIADIEKNGAQFARGVVEMGEAAGDVVEE

Frame C:
nnk*vkikk*nnkscnlffsfwnsifstttttlwci*iisitwwrk*tsv*gcqsksffs
nts*trsdcyffqiqwry*hllfp*dtnccks*rvsacndpnsk*ygy*w*ncficlsrd
iypgfqwtkcwqfecsnqwtqfsntswaiystwkvd*cpctfgemd*ikffnkytnh*ih
**s---

---lqdywd*lvkvlkrlptvlkslv*ifgikpkvfsamvkklpvvkqvlpl*klkmkvk
qlsklvnpl*vl*kmmvrqlsmlanll*pl*kmkvrqlsmlvnpl*pl*kimvrqlsmlv
npl*pl*kmkvrqlsmlvdll*pl*kmmvrqlsmlvkllfkl*kkkpqsl*klvklllip
qekealhlflkvvlqllilkkmvhnlqevl*kwvkqlvmllkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH413 (CFH413Q) /CSM/CF/CFH4-A/CFH413Q.Seq.d/                       2196   0.0
CFI752 (CFI752Q) /CSM/CF/CFI7-C/CFI752Q.Seq.d/                       1263   0.0
CFG137 (CFG137Q) /CSM/CF/CFG1-B/CFG137Q.Seq.d/                       1255   0.0
CHD107 (CHD107Q) /CSM/CH/CHD1-A/CHD107Q.Seq.d/                       1253   0.0
CFI211 (CFI211Q) /CSM/CF/CFI2-A/CFI211Q.Seq.d/                       1249   0.0
CHC855 (CHC855Q) /CSM/CH/CHC8-C/CHC855Q.Seq.d/                       1243   0.0
CHD584 (CHD584Q) /CSM/CH/CHD5-D/CHD584Q.Seq.d/                       1195   0.0
SFG511 (SFG511Q) /CSM/SF/SFG5-A/SFG511Q.Seq.d/                       1176   0.0
CHC426 (CHC426Q) /CSM/CH/CHC4-B/CHC426Q.Seq.d/                       1148   0.0
SFF453 (SFF453Q) /CSM/SF/SFF4-C/SFF453Q.Seq.d/                       1104   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF106592|AF106592.1 Caenorhabditis elegans cosmid D1037, complete sequence.    38   0.068  5
BZ280484|BZ280484.1 CH230-480C10.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-480C10, genomic survey sequence.    42   0.20   2
AC008572|AC008572.6 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence.    34   0.94   9
AF100466|AF100466.2 Dengue virus type 2 strain Mara4 polyprotein gene, complete cds.    46   1.2    1
AF489932|AF489932.1 Dengue Virus Type 2 strain BR64022, complete genome.    46   1.2    1
CA305082|CA305082.1 As_adfo_27F02_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_27F02 5', mRNA sequence.    46   1.2    1
CA304740|CA304740.1 As_adfo_21G05_T3 Ascaris suum adult female ovary Ascaris suum cDNA clone As_adfo_21G05 5', mRNA sequence.    46   1.2    1
AC104108|AC104108.3 Homo sapiens chromosome 5 clone CTD-2037K23, complete sequence.    36   1.6    9
AC128439|AC128439.2 Rattus norvegicus clone CH230-206J7, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    32   2.1    2
AC095129|AC095129.6 Rattus norvegicus clone CH230-8E13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    32   2.1    2
dna update 2004. 2. 1
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE016817_40(AE016817|pid:none) Ashbya gossypii (= Eremothecium g...    68   6e-10
CR767821_118(CR767821|pid:none) Ehrlichia ruminantium strain Wel...    65   5e-09
CR925678_108(CR925678|pid:none) Ehrlichia ruminantium str. Welge...    63   2e-08
AF308673_2(AF308673|pid:none) Cowdria ruminantium clone 26hw hyp...    57   1e-06
AE014075_3573(AE014075|pid:none) Escherichia coli CFT073, comple...    56   2e-06
AE005674_2993(AE005674|pid:none) Shigella flexneri 2a str. 301, ...    56   2e-06
AF200692_21(AF200692|pid:none) Shigella flexneri 2a she pathogen...    56   2e-06
CP000617_291(CP000617|pid:none) Burkholderia vietnamiensis G4 pl...    56   2e-06
CU928145_3285(CU928145|pid:none) Escherichia coli 55989 chromoso...    56   3e-06
CP000394_1605(CP000394|pid:none) Granulibacter bethesdensis CGDN...    55   4e-06
protein update 2009. 5.15
PSORT 

 psg: 0.98  gvh: 0.66  alm: 0.41  top: 0.43  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: extracellular, including cell wall
	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFH413 is exc
5' end seq. ID CFH413F
5' end seq. 
>CFH413F.Seq
ATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATAAATCTTGTAATTTATTTTTTT
CTTTTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCA
GCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCT
CAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGAC
ATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATG
ACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAG
ATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGA
CCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTT
GCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTC
ATTGATGATCATC----------
Length of 5' end seq. 553
3' end seq. ID CFH413Z
3' end seq. 
>CFH413Z.Seq
----------TCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATTAAAGAGGCTGCCA
ACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGTATTTTCAGCCATG
GTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTTGAAAATGAAGGTA
AAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAATGATGGTAAGGCAG
TTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCA
ATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCAGTTGTCAATGCTG
GTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTCAATGCTGGTGGAT
CTGTTGTAACCTCTGTAAAAAATGATGGTAAGGCAGTTGTCAATGCTGGTGAAACTGTTG
TTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAAACTGTTATTGATT
CCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCAATTGCTGATATTG
AAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAAGCAGCTGGTGATG
TTGTTGAAGAAA
Length of 3' end seq. 662
Connected seq. ID CFH413P
Connected seq. 
>CFH413P.Seq
ATAATAATAAATAAGTAAAAATAAAAAAATGAAATAATAAATCTTGTAATTTATTTTTTT
CTTTTTGGAATAGTATATTCTCAACCACCACAACCACACTATGGTGTATTTGAATTATCA
GCATTACGTGGTGGAGAAAATAAACTTCTGTATAGGGGTGCCAATCTAAAAGCTTTTTCT
CAAACACCAGCTAGACCAGGAGTGATTGTTACTTTTTTCAGATACAATGGAGGTATTGAC
ATTTACTATTCCCATAGGATACAAATTGTTGCAAATCTTGAAGAGTCAGCGCGTGTAATG
ACCCAAACTCCAAATAATATGGCTACTAGTGGTAGAATTGTTTCATATGCTTATCAAGAG
ATATCTACCCAGGTTTTCAATGGACTAAATGTTGGCAATTTGAATGCTCTAATCAATGGA
CCCAATTTAGTAACACCAGCTGGGCCATTTATTCCACATGGAAGGTTGATTAATGTCCTT
GCACTTTTGGCGAGATGGATTAGATTAAATTTTTCAACAAATATACAAATCATTGAATTC
ATTGATGATCATC----------TCCTGCAGGATTATTGGGATTAGTTAGTGAAGGTATT
AAAGAGGCTGCCAACGGTGTTAAAGTCACTGGTGTAAATATTTGGAATAAAGCCAAAAGT
ATTTTCAGCCATGGTAAAGAAGCTGCCAGTAGTAAAACAAGTGCTGCCGTTGTAAAAGTT
GAAAATGAAGGTAAAGCAGTTGTCAAAGCTGGTGAATCCGTTGTAAGTACTGTGAAAAAT
GATGGTAAGGCAGTTGTCAATGCTGGCGAATCTGTTGTAACCTCTGTGAAAAATGAAGGT
AAGGCAGTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTAAAAAATAATGGTAAGGCA
GTTGTCAATGCTGGTGAATCCGTTGTAACCTCTGTGAAAAATGAAGGTAAGGCAGTTGTC
AATGCTGGTGGATCTGTTGTAACCTCTGTAAAAAATGATGGTAAGGCAGTTGTCAATGCT
GGTGAAACTGTTGTTCAAACTGTGAAAAAAGAAGCCTCAGTCATTGTGAAAACTGGTGAA
ACTGTTATTGATTCCACAAGAAAAGGAGGCGCTGCATTTGTTTCTGAAGGTGGTGCTGCA
ATTGCTGATATTGAAAAAAATGGTGCACAATTTGCAAGAGGTGTTGTAGAAATGGGTGAA
GCAGCTGGTGATGTTGTTGAAGAAA
Length of connected seq. 1215
Full length Seq ID -
Full length Seq. -
Length of full length seq. -