CFH353
Library CF
(Link to library)
Clone ID CFH353
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16205-1
Original site URL
Representative seq. ID CFH353Z
(Link to Original site)
Representative DNA sequence
>CFH353 (CFH353Q) /CSM/CF/CFH3-C/CFH353Q.Seq.d/
XXXXXXXXXXATAGAGACCTCTACACTGTCTCTCAAGATGTAACCAAATTGGCAATTCAA
TCGGCCGAACAAAATGGTATTGTATTTTTGGATGAAATCGATAAGATTTGTACATCTCGT
GAAAGTATAAAGAATGGTGGTGACGCTTCAACCGATGGCGTTCAAAGAGATCTTCTTCCA
ATCGTTGAAGGTTGTATGGTTAGCACAAAGTATGGTCAAATAGATACCAGTAGAATCTTA
TTCATTGCTTCAGGTGCTTTCCATAATACTAAACCATCAGATCTCATTAGTGAATTACAA
GGTCGTTTACCAATTCGTGTTGAACTTAAACCATTGGAACAAAAGGATTTCTATAAGATC
TTAACTGAACCAAAGAATAATCAAATTCAACAACAAAAAGCATTACTTAAAACTGAAGAT
ATTCAATTGGAATTCACTGATGATGCATTGTTAGAAGTTGCAAAAATCGCTTTTGAAGCA
AATGCTCAAGTTCAAAATCTTGGCGCTAGAAGATTACATGGTATCATTGAACGTATCGTA
GAGGATATAAGTTTTAATTGTGATATTCATAAAGGTAAAACAGTTGTTTTAGATACTCCC
GACATTAGAAAACATTTAAGNAATATATTCAAAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---RDLYTVSQDVTKLAIQSAEQNGIVFLDEIDKICTSRESIKNGGDASTDGVQRDLLPI
VEGCMVSTKYGQIDTSRILFIASGAFHNTKPSDLISELQGRLPIRVELKPLEQKDFYKIL
TEPKNNQIQQQKALLKTEDIQLEFTDDALLEVAKIAFEANAQVQNLGARRLHGIIERIVE
DISFNCDIHKGKTVVLDTPDIRKHLXNIFK


Translated Amino Acid sequence (All Frames)
Frame A:
---*rplhclsrcnqignsigrtkwycifg*nr*dlyis*kykeww*rfnrwrskrsssn
r*rlyg*hkvwsnryq*nlihcfrcfp*y*tirsh**itrsftnsc*t*tigtkgfl*dl
n*tke*snsttksit*n*rysigih**civrscknrf*skcssskswr*kitwyh*tyrr
gykf*l*ys*r*nscfrysrh*ktfkxyiqn


Frame B:
---RDLYTVSQDVTKLAIQSAEQNGIVFLDEIDKICTSRESIKNGGDASTDGVQRDLLPI
VEGCMVSTKYGQIDTSRILFIASGAFHNTKPSDLISELQGRLPIRVELKPLEQKDFYKIL
TEPKNNQIQQQKALLKTEDIQLEFTDDALLEVAKIAFEANAQVQNLGARRLHGIIERIVE
DISFNCDIHKGKTVVLDTPDIRKHLXNIFK


Frame C:
---etstlslkm*pnwqfnrpnkmvlyfwmksirfvhlvkv*rmvvtlqpmafkeiffqs
lkvvwlaqsmvk*ipvesysllqvlsiilnhqislvnykvvyqfvlnlnhwnkrisirs*
lnqriikfnnkkhylklkifnwnslmmhc*klqksllkqmlkfkilaledymvslnvs*r
i*vlivifikvkqlf*ilptleni*xiysk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH353 (CFH353Q) /CSM/CF/CFH3-C/CFH353Q.Seq.d/ 1233 0.0
AHH566 (AHH566Q) /CSM/AH/AHH5-C/AHH566Q.Seq.d/ 1207 0.0
VHL364 (VHL364Q) /CSM/VH/VHL3-C/VHL364Q.Seq.d/ 1203 0.0
VHL386 (VHL386Q) /CSM/VH/VHL3-D/VHL386Q.Seq.d/ 426 e-118
VHG527 (VHG527Q) /CSM/VH/VHG5-B/VHG527Q.Seq.d/ 280 2e-74
CHK858 (CHK858Q) /CSM/CH/CHK8-C/CHK858Q.Seq.d/ 42 0.010
SSC795 (SSC795Q) /CSM/SS/SSC7-D/SSC795Q.Seq.d/ 40 0.040
CHN209 (CHN209Q) /CSM/CH/CHN2-A/CHN209Q.Seq.d/ 40 0.040
AHB765 (AHB765Q) /CSM/AH/AHB7-C/AHB765Q.Seq.d/ 40 0.040
AFM493 (AFM493Q) /CSM/AF/AFM4-D/AFM493Q.Seq.d/ 40 0.040

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U32731|U32731.1 Haemophilus influenzae Rd section 46 of 163 of the complete genome. 44 2e-05 2
AR274513|AR274513.1 Sequence 1 from patent US 6506581. 44 0.003 2
AE016952|AE016952.1 Enterococcus faecalis V583, section 6 of 11 of the complete genome. 36 0.006 2
AR394895|AR394895.1 Sequence 910 from patent US 6617156. 36 0.007 3
BD193494|BD193494.1 Enterococcus faecialis polynucleotides and polypeptides. 36 0.007 2
AC012235|AC012235.4 Homo sapiens clone RP11-15P11, WORKING DRAFT SEQUENCE, 29 unordered pieces. 40 0.019 3
AF270500|AF270500.1 Leptospira borgpetersenii HlsV (hslV) gene, complete cds; and HslU (hslU) gene, partial cds. 40 0.052 2
AE014130|AE014130.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 55 of 57 of the complete genome. 44 0.076 3
AB102780|AB102780.1 Dictyostelium discoideum K4 mRNA for kinesin-related protein K4, complete cds. 34 0.10 2
AF108665|AF108665.1 Buchnera aphidicola heat shock protein HslU (hslU) gene, partial cds; and heat inducible protein Ibp (ibp), ferridoxin NADP+ reductase (fpr), lysyl-tRNA synthetase homolog (yjeA), and putative lipopolysaccharide biosynthesis enzyme (kdtB) genes, complete cds. 44 0.11 2
dna update 2004. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001080_1531(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 227 2e-58
CP001229_1499(CP001229|pid:none) Sulfurihydrogenibium azorense A... 226 3e-58
AM910989_46(AM910989|pid:none) Plasmodium knowlesi strain H chro... 219 4e-56
CP000593_274(CP000593|pid:none) Ostreococcus lucimarinus CCE9901... 218 8e-56
CP000157_44(CP000157|pid:none) Erythrobacter litoralis HTCC2594,... 218 8e-56
AF108665_1(AF108665|pid:none) Buchnera aphidicola heat shock pro... 217 2e-55
(B0TZG2) RecName: Full=ATP-dependent hsl protease ATP-binding su... 216 3e-55
(A7HSH7) RecName: Full=ATP-dependent hsl protease ATP-binding su... 216 3e-55
CR954213_297(CR954213|pid:none) Ostreococcus tauri strain OTTH05... 216 4e-55
(A0Q6L9) RecName: Full=ATP-dependent hsl protease ATP-binding su... 216 4e-55
protein update 2009. 5.15
PSORT

psg: 0.75 gvh: 0.31 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for CFH353 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH353Z
3' end seq.
>CFH353Z.Seq
----------ATAGAGACCTCTACACTGTCTCTCAAGATGTAACCAAATTGGCAATTCAA
TCGGCCGAACAAAATGGTATTGTATTTTTGGATGAAATCGATAAGATTTGTACATCTCGT
GAAAGTATAAAGAATGGTGGTGACGCTTCAACCGATGGCGTTCAAAGAGATCTTCTTCCA
ATCGTTGAAGGTTGTATGGTTAGCACAAAGTATGGTCAAATAGATACCAGTAGAATCTTA
TTCATTGCTTCAGGTGCTTTCCATAATACTAAACCATCAGATCTCATTAGTGAATTACAA
GGTCGTTTACCAATTCGTGTTGAACTTAAACCATTGGAACAAAAGGATTTCTATAAGATC
TTAACTGAACCAAAGAATAATCAAATTCAACAACAAAAAGCATTACTTAAAACTGAAGAT
ATTCAATTGGAATTCACTGATGATGCATTGTTAGAAGTTGCAAAAATCGCTTTTGAAGCA
AATGCTCAAGTTCAAAATCTTGGCGCTAGAAGATTACATGGTATCATTGAACGTATCGTA
GAGGATATAAGTTTTAATTGTGATATTCATAAAGGTAAAACAGTTGTTTTAGATACTCCC
GACATTAGAAAACATTTAAGNAATATATTCAAAAC
Length of 3' end seq. 625
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -