AFE732
Library AF
(Link to library)
Clone ID AFE732
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16520-1
Original site URL
Representative seq. ID AFE732Z
(Link to Original site)
Representative DNA sequence
>AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/
XXXXXXXXXXTGAAAAGGCACCAACCGAATCCTACAGCGATATCGGTGGTTTGGAAGCAC
AAGTTCAAGAGATGAAAGAAGCCATCGAATTGCCATTGACTCATCCAGAGCTCTATGAGG
AGATTGGTATCAAACCACCAAAGGGTGTCATCCTCTATGGTGAGCCAGGTACTGGTAAGA
CTTTATTAGCCAAAGCCGTAGCAAATCAAACATCCGCTACATTTTTACGTGTTGTAGGCT
CAGAATTAATTCAAAAGTATTTAGGTGATGGTCCAAAATTAGTTCGTGAATTATTCAGAG
TTGCAGATGAATGTGCACCATCAATTGTTTTCATTGATGAAATCGATGCTGTTGGTACCA
AACGTTATGATTCTCAATCTGGTGGTGAACGTGAAATTCAAAGAACTATGTTGGAACTCT
TGAATCAATTGGATGGTTTCGATGCTAGAACCGATGTAAAAGTTATCATGGCTACAAATC
GTATTGAAACTTTAGATCCTGCTCTCATTCGTCCAGGTCGTATCGATCGTAAAATTGAAT
TCCCTCTTCCAGATATTAAGACCAAGAGAAAGATCTTTGAAATTCATACTGCTAAAATGA
ATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGATTTATCCGGTG
CGATATCAAAGCCATCTGTACGAATCGGTCTTTTAGCACTCAGAGAACGTAGAANAGAGA
ACTCATAC
sequence update 2001. 6. 2
Translated Amino Acid sequence
---EKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKT
LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTK
RYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEF
PLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGAISKPSVRIGLLALRERRXEN
SY


Translated Amino Acid sequence (All Frames)
Frame A:
---EKAPTESYSDIGGLEAQVQEMKEAIELPLTHPELYEEIGIKPPKGVILYGEPGTGKT
LLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTK
RYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEF
PLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGAISKPSVRIGLLALRERRXEN
SY


Frame B:
---krhqpnptaisvvwkhkfkr*kkpsnch*liqssmrrlvsnhqrvsssmvsqvlvrl
y*pkp*qikhplhfyvl*aqn*fksi*vmvqn*fvnyselqmnvhhqlfslmksmllvpn
vmilnlvvnvkfkelcwns*inwmvsmlepm*klswlqivlkl*illsfvqvvsivklns
lfqilrprerslkfillk*islkmltlksllclkmiypvryqshlyesvf*hsenvexrt
h


Frame C:
---kgtnrilqryrwfgstssrdershriaidssral*gdwyqttkgchplw*aryw*df
isqsrsksniryiftccrlrinskvfr*wskiss*iiqscr*mctincfh**nrccwyqt
l*fsiww*t*nsknyvgtlesigwfrc*nrcksyhgyksy*nfrscshssrsyrs*n*ip
ssry*dqekdl*nsyc*nesl*rc*p*rvcyv*r*fircdikaictnrsfstqrt*xrel
i


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE732 (AFE732Q) /CSM/AF/AFE7-B/AFE732Q.Seq.d/ 1417 0.0
AFN319 (AFN319Q) /CSM/AF/AFN3-A/AFN319Q.Seq.d/ 1237 0.0
SFH857 (SFH857Q) /CSM/SF/SFH8-C/SFH857Q.Seq.d/ 1170 0.0
SLB640 (SLB640Q) /CSM/SL/SLB6-B/SLB640Q.Seq.d/ 981 0.0
AFC641 (AFC641Q) /CSM/AF/AFC6-B/AFC641Q.Seq.d/ 607 e-172
AFA160 (AFA160Q) /CSM/AF/AFA1-C/AFA160Q.Seq.d/ 585 e-166
FC-AJ15 (FC-AJ15Q) /CSM/FC/FC-AJ/FC-AJ15Q.Seq.d/ 547 e-155
VFB722 (VFB722Q) /CSM/VF/VFB7-A/VFB722Q.Seq.d/ 486 e-136
SFE651 (SFE651Q) /CSM/SF/SFE6-C/SFE651Q.Seq.d/ 468 e-131
AFB603 (AFB603Q) /CSM/AF/AFB6-A/AFB603Q.Seq.d/ 450 e-125

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI741860|BI741860.1 kt81h06.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarterPROBABLE 26S PROTEASE REGULATORY SUBUNIT 4. [1] ;, mRNA sequence. 163 4e-64 3
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 192 3e-62 2
BU495626|BU495626.1 PfESToab75e05.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9SL67 Q9SL67 26S PROTEASOME SUBUNIT 4. ;, mRNA sequence. 192 3e-62 2
BU495625|BU495625.1 PfESToab75e04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q9SL67 Q9SL67 26S PROTEASOME SUBUNIT 4. ;, mRNA sequence. 192 3e-62 2
BI815241|BI815241.1 PfESToaa16c01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:PRS4_HUMAN Q03527 26S PROTEASE REGULATORY SUBUNIT 4 ;, mRNA sequence. 192 3e-62 2
CA754855|CA754855.1 BR030007002_BR030_B09_66_076.ab1 OA Oryza sativa (japonica cultivar-group) cDNA clone BR030007002_BR030_B09_66_076.ab1 similar to agCP2907 [Anopheles gambiae str. PEST], mRNA sequence. 230 7e-60 2
BU498573|BU498573.1 PfESToab99a02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:PRS4_DROME P48601 26S PROTEASE REGULATORY SUBUNIT 4 ;, mRNA sequence. 155 4e-55 3
BM959492|BM959492.1 PLATE_9_C08_06.AB1 GS Lambda-Triplex, 10 day germinating spore library Glomus intraradices cDNA, mRNA sequence. 161 4e-52 3
BF046998|BF046998.1 EST1095 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaI6E10 5' similar to 26S protease regulatory subunit 4 of D. melanogaster, mRNA sequence. 163 2e-47 2
BI670760|BI670760.1 PfESToaa03h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:PRS4_ORYSA P46466 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG ;, mRNA sequence. 125 6e-47 3
dna update 2004. 5. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF123391_1(AF123391|pid:none) Arabidopsis thaliana 26S proteasom... 400 e-110
AB161192_1(AB161192|pid:none) Arabidopsis thaliana HLR mRNA for ... 400 e-110
AC006081_7(AC006081|pid:none) Arabidopsis thaliana chromosome 2 ... 399 e-110
D17789_1(D17789|pid:none) Oryza sativa Japonica Group mRNA for h... 396 e-109
(P46466) RecName: Full=26S protease regulatory subunit 4 homolog... 396 e-109
AY087584_1(AY087584|pid:none) Arabidopsis thaliana clone 36815 m... 396 e-109
BT054998_1(BT054998|pid:none) Zea mays full-length cDNA clone ZM... 395 e-109
AB037154_1(AB037154|pid:none) Oryza sativa Japonica Group OsRPT2... 395 e-109
FB781850_1(FB781850|pid:none) Sequence 1123 from Patent WO200803... 395 e-109
BT062241_1(BT062241|pid:none) Zea mays full-length cDNA clone ZM... 395 e-109
protein update 2009. 4.19
PSORT

psg: 0.75 gvh: 0.29 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: Golgi
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for AFE732 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFE732Z
3' end seq.
>AFE732Z.Seq
----------TGAAAAGGCACCAACCGAATCCTACAGCGATATCGGTGGTTTGGAAGCAC
AAGTTCAAGAGATGAAAGAAGCCATCGAATTGCCATTGACTCATCCAGAGCTCTATGAGG
AGATTGGTATCAAACCACCAAAGGGTGTCATCCTCTATGGTGAGCCAGGTACTGGTAAGA
CTTTATTAGCCAAAGCCGTAGCAAATCAAACATCCGCTACATTTTTACGTGTTGTAGGCT
CAGAATTAATTCAAAAGTATTTAGGTGATGGTCCAAAATTAGTTCGTGAATTATTCAGAG
TTGCAGATGAATGTGCACCATCAATTGTTTTCATTGATGAAATCGATGCTGTTGGTACCA
AACGTTATGATTCTCAATCTGGTGGTGAACGTGAAATTCAAAGAACTATGTTGGAACTCT
TGAATCAATTGGATGGTTTCGATGCTAGAACCGATGTAAAAGTTATCATGGCTACAAATC
GTATTGAAACTTTAGATCCTGCTCTCATTCGTCCAGGTCGTATCGATCGTAAAATTGAAT
TCCCTCTTCCAGATATTAAGACCAAGAGAAAGATCTTTGAAATTCATACTGCTAAAATGA
ATCTCTCTGAAGATGTTAACCTTGAAGAGTTTGTTATGTCTAAAGATGATTTATCCGGTG
CGATATCAAAGCCATCTGTACGAATCGGTCTTTTAGCACTCAGAGAACGTAGAANAGAGA
ACTCATAC
Length of 3' end seq. 718
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -