CFH318
Library CF
(Link to library)
Clone ID CFH318
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16287-1
Original site URL
Representative seq. ID CFH318Z
(Link to Original site)
Representative DNA sequence
>CFH318 (CFH318Q) /CSM/CF/CFH3-A/CFH318Q.Seq.d/
XXXXXXXXXXAGTTNANCAANCNTGNTTANANCANGGGATTTTCNTTTCCNANCNAGTTN
AAAAACCCGGGATTTTTGANATTGNTTANNANGGGACTGGGGCCCNTCCNGGGGCATGTT
GGAAATTGAAAAAANANGCNAAAGNAAAANTCNATCNCNTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VXQXXLXXGIFXSXXVXKPGIFXIXXXGTGAXPGACWKLKKXAKXKXXXX


Translated Amino Acid sequence (All Frames)
Frame A:
---VXQXXLXXGIFXSXXVXKPGIFXIXXXGTGAXPGACWKLKKXAKXKXXXX


Frame B:
---xxxxxxxxgfsfpxxxknpgflxlxxxglgpxxghvgn*kxxxkxxsix


Frame C:
---xxxxxxxxdfxfxxsxktrdf*xxlxxdwgpsxgmleiekxxxxkxxsx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH318 (CFH318Q) /CSM/CF/CFH3-A/CFH318Q.Seq.d/ 115 2e-25
CHB881 (CHB881Q) /CSM/CH/CHB8-D/CHB881Q.Seq.d/ 107 5e-23
SFD808 (SFD808Q) /CSM/SF/SFD8-A/SFD808Q.Seq.d/ 101 3e-21
AFC601 (AFC601Q) /CSM/AF/AFC6-A/AFC601Q.Seq.d/ 100 1e-20
CFA566 (CFA566Q) /CSM/CF/CFA5-C/CFA566Q.Seq.d/ 96 2e-19
AFI203 (AFI203Q) /CSM/AF/AFI2-A/AFI203Q.Seq.d/ 96 2e-19
CHE462 (CHE462Q) /CSM/CH/CHE4-C/CHE462Q.Seq.d/ 94 7e-19
CHB519 (CHB519Q) /CSM/CH/CHB5-A/CHB519Q.Seq.d/ 94 7e-19
CFC446 (CFC446Q) /CSM/CF/CFC4-B/CFC446Q.Seq.d/ 94 7e-19
CFD432 (CFD432Q) /CSM/CF/CFD4-B/CFD432Q.Seq.d/ 88 4e-17

own update 2004.12.25
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 377,237
Number of Sequences: 31830026
Number of extensions: 377237
Number of successful extensions: 76358
Number of sequences better than 10.0: 0
length of query: 161
length of database: U,136,196,413
effective HSP length: 21
effective length of query: 140
effective length of database: T,467,765,867
effective search space: 5105487221380
effective search space used: 5105487221380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 1.31
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 142,186,214
protein update 2009. 5.15
PSORT

psg: 0.87 gvh: 0.51 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CFH318 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH318Z
3' end seq.
>CFH318Z.Seq
----------AGTTNANCAANCNTGNTTANANCANGGGATTTTCNTTTCCNANCNAGTTN
AAAAACCCGGGATTTTTGANATTGNTTANNANGGGACTGGGGCCCNTCCNGGGGCATGTT
GGAAATTGAAAAAANANGCNAAAGNAAAANTCNATCNCNTT
Length of 3' end seq. 151
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -