NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH296
Library CF
(Link to library)
Clone ID CFH296
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15009-1
Original site URL
Representative seq. ID CFH296P
(Link to Original site)
Representative DNA sequence 
>CFH296 (CFH296Q) /CSM/CF/CFH2-D/CFH296Q.Seq.d/
ATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTATCT
TGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCAAA
TGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGTAA
AGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTTT
AGTTTGCACATCAAGATTTTGGTTTAACTATAGGCATATAGCAAATGTATTAGGTTTTTA
TAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATGA
TATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCATAA
ATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTTGA
AAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGAGATT
ATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAATT
TTTAAAATTTCAXXXXXXXXXXTTCTCCAAATATTTTAGCAATTGGTTCAAGTAAATTTG
GTGAAAATAGTTATTCTCATCATTCAGATCCAGAATTAGGGGTTGCAGTTATTGATAGAT
TTACATATTATACATTGGAATTCTTTGAAAGTGTTGACCCACATAATGTAACATTATATC
AATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTGAATATAGGACAGATT
TATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTGGTTCTGTAATGAGAG
CTGATTTAACTCCTTCAACAATTGTAAATGAAAAACAAAAAGATGAAAAAGTAGAAAAAG
ATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATAATGTAAAAAAACAAA
CACCAAAAACTAAACAAATTTCATATAGAATTACAGAGAAACCAACATCAATCCAAGTAC
AAAATAACAAAGATAGTGAATTAAATCTTTTCAATTCAAAATTTATTACTTCAGCTTTAA
TATTTTTAGTAGTATTTGGATTACTTTCTTGGTCTTCTGATTTTGTAAAATCAAATCTTA
TTTTAAATACAAATATTTAAAAGATCTNAAATCAAAATCAAAGCAAATTTAAGTAAGGGT
ATAAATAAATAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
yihttikk*KMKKTTFRFYLVFLYAILVLYIGGIEDAISNGGAMGYEQPKTNFYNGGNGK
ADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFYRTVKKLGIPDSQIILMLADD
MACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVLTGRHEPEVARSKRL
LTDDKSNILIFLTGHGGDEFLKF---

---SPNILAIGSSKFGENSYSHHSDPELGVAVIDRFTYYTLEFFESVDPHNVTLYQLFNT
YSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPSTIVNEKQKDEKVEKDETTV
NNNNNNNNNDNVKKQTPKTKQISYRITEKPTSIQVQNNKDSELNLFNSKFITSALIFLVV
FGLLSWSSDFVKSNLILNTNI*kixnqnqskfk*gyk*in
Translated Amino Acid sequence (All Frames) 
Frame A:
iythnnkeikdekndi*ilscificnisfiyrwy*rcnfkwwgdgi*ttknkll*ww*w*
sgl*c*tffqr*tyk*lgtfslhikilv*l*ayskcirfl*nc*eiryt*ftnyinvsr*
ygm*s*kficw*yiq**ks*iefiw**y*s*l*ri*s*c*kfh*svnw*t*trgstfkei
idr**k*yfnflnwsww**ifkis---

---fskyfsnwfk*iw*k*lfssfrsrirgcsy**iyilyigil*kc*pt*cniisivqy
i*stkitit**i*drfiq*tirssscyrlfwfcnes*fnsfnnck*ktkr*ksrkr*nyc
k*******qr*ckktntkn*tnfi*nyretninpstk*qr**iksfqfkiyyfsfnifss
iwitflvf*fckiksyfkykylkdlkskskqi*vrv*ink*

Frame B:
yihttikk*KMKKTTFRFYLVFLYAILVLYIGGIEDAISNGGAMGYEQPKTNFYNGGNGK
ADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFYRTVKKLGIPDSQIILMLADD
MACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVLTGRHEPEVARSKRL
LTDDKSNILIFLTGHGGDEFLKF---

---SPNILAIGSSKFGENSYSHHSDPELGVAVIDRFTYYTLEFFESVDPHNVTLYQLFNT
YSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPSTIVNEKQKDEKVEKDETTV
NNNNNNNNNDNVKKQTPKTKQISYRITEKPTSIQVQNNKDSELNLFNSKFITSALIFLVV
FGLLSWSSDFVKSNLILNTNI*kixnqnqskfk*gyk*in

Frame C:
iytqq*rnkr*kkrhldfilyfymqy*fyi*vvlkmqfqmvgrwdmnnqkqtfimvvmvk
riimlnifsevniqiighf*fahqdfgltigi*qmy*vfiellrn*vylihkly*c*qmi
whvileihmlvvysimkiin*iymviilkltiedmklmlkislec*lvdmnqr*hvqrdy
*qmikvif*fs*lvmvvmnf*nf---

---lqif*qlvqvnlvkiviliiqiqn*glqllidlhiihwnslkvlthim*hyincsih
ivhknynhivnigqiysidh*ikfllqtflvl**eli*llqql*mknkkmkk*kkmkll*
iiiiiiittim*knkhqklnkfhielqrnqhqskykitkivn*ifsiqnlllql*yf**y
ldyflgllil*nqilf*iqifkrsxikikanlskgink*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH296 (CFH296Q) /CSM/CF/CFH2-D/CFH296Q.Seq.d/                       1731   0.0
CFB364 (CFB364Q) /CSM/CF/CFB3-C/CFB364Q.Seq.d/                       1164   0.0
AFJ746 (AFJ746Q) /CSM/AF/AFJ7-B/AFJ746Q.Seq.d/                       1164   0.0
SFJ248 (SFJ248Q) /CSM/SF/SFJ2-B/SFJ248Q.Seq.d/                       1156   0.0
SFL282 (SFL282Q) /CSM/SF/SFL2-D/SFL282Q.Seq.d/                       1138   0.0
CFF820 (CFF820Q) /CSM/CF/CFF8-A/CFF820Q.Seq.d/                       1132   0.0
SFD257 (SFD257Q) /CSM/SF/SFD2-C/SFD257Q.Seq.d/                       1096   0.0
CFH352 (CFH352Q) /CSM/CF/CFH3-C/CFH352Q.Seq.d/                        924   0.0
CHD461 (CHD461Q) /CSM/CH/CHD4-C/CHD461Q.Seq.d/                        916   0.0
VFB704 (VFB704Q) /CSM/VF/VFB7-A/VFB704Q.Seq.d/                        753   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BI507800|BI507800.1 BB170001B10H11.5 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170001B10H11 5', mRNA sequence.    76   7e-29  5
BI515788|BI515788.1 BB160020B10A08 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10A08 5', mRNA sequence.    76   2e-28  5
BI515765|BI515765.1 BB160020A20B07 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020A20B07 5', mRNA sequence.    76   5e-24  4
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    34   6e-11  19
BU835350|BU835350.1 T072G09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    40   8e-10  4
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    34   1e-09  18
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    38   1e-09  17
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence.    36   1e-09  21
BU824990|BU824990.1 UK102C04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    40   3e-09  3
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   4e-09  16
dna update 2004. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK117596_1(AK117596|pid:none) Arabidopsis thaliana At1g08750 mRN...   230   5e-86
AY084883_1(AY084883|pid:none) Arabidopsis thaliana clone 120167 ...   230   5e-86
AC003981_24(AC003981|pid:none) Genomic sequence for Arabidopsis ...   198   7e-74
CR860289_1(CR860289|pid:none) Pongo abelii mRNA; cDNA DKFZp459A1...   218   4e-55
(Q92643) RecName: Full=GPI-anchor transamidase;          Short=G...   218   4e-55
(Q5R6L8) RecName: Full=GPI-anchor transamidase;          Short=G...   218   4e-55
AJ851449_1(AJ851449|pid:none) Gallus gallus mRNA for hypothetica...   217   8e-55
AK043033_1(AK043033|pid:none) Mus musculus 7 days neonate cerebe...   216   1e-54
AK168666_1(AK168666|pid:none) Mus musculus 17 days embryo kidney...   216   1e-54
BC106240_1(BC106240|pid:none) Xenopus laevis hypothetical LOC495...   215   2e-54
protein update 2009. 5.15
PSORT 

 psg: 0.95  gvh: 0.58  alm: 0.24  top: 0.00  tms: 0.13  mit: 0.37  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 32.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: nuclear
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for CFH296 is end
5' end seq. ID CFH296F
5' end seq. 
>CFH296F.Seq
ATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTATCT
TGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCAAA
TGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGTAA
AGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTTT
AGTTTGCACATCAAGATTTTGGTTTAACTATAGGCATATAGCAAATGTATTAGGTTTTTA
TAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATGA
TATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCATAA
ATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTTGA
AAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGAGATT
ATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAATT
TTTAAAATTTCA----------
Length of 5' end seq. 612
3' end seq. ID CFH296Z
3' end seq. 
>CFH296Z.Seq
----------TTCTCCAAATATTTTAGCAATTGGTTCAAGTAAATTTGGTGAAAATAGTT
ATTCTCATCATTCAGATCCAGAATTAGGGGTTGCAGTTATTGATAGATTTACATATTATA
CATTGGAATTCTTTGAAAGTGTTGACCCACATAATGTAACATTATATCAATTGTTCAATA
CATATAGTCCACAAAAATTACAATCACATAGTGAATATAGGACAGATTTATTCAATAGAC
CATTAGATCAAGTTCCTGTTACAGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTC
CTTCAACAATTGTAAATGAAAAACAAAAAGATGAAAAAGTAGAAAAAGATGAAACTACTG
TAAATAATAATAATAATAATAATAACAACGATAATGTAAAAAAACAAACACCAAAAACTA
AACAAATTTCATATAGAATTACAGAGAAACCAACATCAATCCAAGTACAAAATAACAAAG
ATAGTGAATTAAATCTTTTCAATTCAAAATTTATTACTTCAGCTTTAATATTTTTAGTAG
TATTTGGATTACTTTCTTGGTCTTCTGATTTTGTAAAATCAAATCTTATTTTAAATACAA
ATATTTAAAAGATCTNAAATCAAAATCAAAGCAAATTTAAGTAAGGGTATAAATAAATAA
ATAA
Length of 3' end seq. 654
Connected seq. ID CFH296P
Connected seq. 
>CFH296P.Seq
ATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTATCT
TGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCAAA
TGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGTAA
AGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTTTT
AGTTTGCACATCAAGATTTTGGTTTAACTATAGGCATATAGCAAATGTATTAGGTTTTTA
TAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGATGA
TATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCATAA
ATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTTGA
AAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGAGATT
ATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAATT
TTTAAAATTTCA----------TTCTCCAAATATTTTAGCAATTGGTTCAAGTAAATTTG
GTGAAAATAGTTATTCTCATCATTCAGATCCAGAATTAGGGGTTGCAGTTATTGATAGAT
TTACATATTATACATTGGAATTCTTTGAAAGTGTTGACCCACATAATGTAACATTATATC
AATTGTTCAATACATATAGTCCACAAAAATTACAATCACATAGTGAATATAGGACAGATT
TATTCAATAGACCATTAGATCAAGTTCCTGTTACAGACTTTTTTGGTTCTGTAATGAGAG
CTGATTTAACTCCTTCAACAATTGTAAATGAAAAACAAAAAGATGAAAAAGTAGAAAAAG
ATGAAACTACTGTAAATAATAATAATAATAATAATAACAACGATAATGTAAAAAAACAAA
CACCAAAAACTAAACAAATTTCATATAGAATTACAGAGAAACCAACATCAATCCAAGTAC
AAAATAACAAAGATAGTGAATTAAATCTTTTCAATTCAAAATTTATTACTTCAGCTTTAA
TATTTTTAGTAGTATTTGGATTACTTTCTTGGTCTTCTGATTTTGTAAAATCAAATCTTA
TTTTAAATACAAATATTTAAAAGATCTNAAATCAAAATCAAAGCAAATTTAAGTAAGGGT
ATAAATAAATAAATAA
Length of connected seq. 1266
Full length Seq ID -
Full length Seq. -
Length of full length seq. -