NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH288
Library CF
(Link to library)
Clone ID CFH288
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00854-1
Original site URL
Representative seq. ID CFH288P
(Link to Original site)
Representative DNA sequence 
>CFH288 (CFH288Q) /CSM/CF/CFH2-D/CFH288Q.Seq.d/
CAAGTTCAATTATAATTGGATTTGATACATTTAATGNAATTATTGATNCAACTTTAAATT
ATTTAATTGTTGCTGAAAGAAAATGNGATGGTTGTNCTCAATATCCACCTTATTAXXXXX
XXXXXAAANNGGGGNNTTAAAANTTTNNNNNAAAAANTANTNCNTNNTTNAATTTTNGNN
AAAANNNAANNCAAATTTCANNAANANGGNTCCCNAAANTTAATTTTTCCTTTAAAAAAN
GTTTTNTTTTANNAATNCCCCCAAAAAANANTTNCCCTNNAATTTTAAAAANNANCNAAN
TTTTTNTTNNNANGGGGATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
SSIIIGFDTFNXIIDXTLNYLIVAERKXDGCXQYPPY---

---XXGXKXXXXKXXXXXIXXKXXXKFXXXGSXXLIFPLKXVXFXXXPQKXXXLXF*kxx
xfxxxxgf
Translated Amino Acid sequence (All Frames) 
Frame A:
qvql*ldlihlmxllxql*ii*lllkenxmvvlnihli---

---kxgx*xfxxkxxxxxnfxxxxxqisxxxxpkxnfsfkkxfxlxxppkxxxpxilkxx
xxfxxxgi

Frame B:
kfnynwi*yi*xny*xnfklfncc*kkmxwlxsistll---

---XXGXKXXXXKXXXXXIXXKXXXKFXXXGSXXLIFPLKXVXFXXXPQKXXXLXF*kxx
xfxxxxgf

Frame C:
SSIIIGFDTFNXIIDXTLNYLIVAERKXDGCXQYPPY---

---xgxlkxxxkxxxxxxfxxkxxxnfxxxxpxx*ffl*kxfxfxnxpkkxxpxnfkxxx
xfxxxgd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH288 (CFH288Q) /CSM/CF/CFH2-D/CFH288Q.Seq.d/                        204   6e-52
SSA713 (SSA713Q) /CSM/SS/SSA7-A/SSA713Q.Seq.d/                        165   5e-40
AFE221 (AFE221Q) /CSM/AF/AFE2-A/AFE221Q.Seq.d/                         40   0.020
SSA281 (SSA281Q) /CSM/SS/SSA2-D/SSA281Q.Seq.d/                         36   0.31
VSJ686 (VSJ686Q) /CSM/VS/VSJ6-D/VSJ686Q.Seq.d/                         34   1.2
VSD281 (VSD281Q) /CSM/VS/VSD2-D/VSD281Q.Seq.d/                         34   1.2
VSA514 (VSA514Q) /CSM/VS/VSA5-A/VSA514Q.Seq.d/                         34   1.2
VFO795 (VFO795Q) /CSM/VF/VFO7-D/VFO795Q.Seq.d/                         34   1.2
VFO214 (VFO214Q) /CSM/VF/VFO2-A/VFO214Q.Seq.d/                         34   1.2
VFN509 (VFN509Q) /CSM/VF/VFN5-A/VFN509Q.Seq.d/                         34   1.2
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC091579|AC091579.2 Homo sapiens clone RP11-962O23, WORKING DRAFT SEQUENCE, 31 unordered pieces.    42   0.020  2
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    36   0.13   10
AC130012|AC130012.3 Rattus norvegicus clone CH230-517E12, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38   0.47   3
BX927212|BX927212.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-262A5.    36   0.96   3
AL117202|AL117202.1 Caenorhabditis elegans YAC Y47D3A.             38   1.4    3
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         32   1.9    6
AL357352|AL357352.11 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-799G19.    38   2.4    4
AC128310|AC128310.2 Rattus norvegicus clone CH230-326L8, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   4.6    1
AC131321|AC131321.3 Mus musculus chromosome 14 clone RP23-401E22 map 14, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    42   4.6    1
AC096574|AC096574.1 Homo sapiens chromosome 2 clone RP11-488K22, complete sequence.    42   4.6    1
dna update 2004. 1.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 194,492,323
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.45  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFH288 is cyt
5' end seq. ID CFH288F
5' end seq. 
>CFH288F.Seq
CAAGTTCAATTATAATTGGATTTGATACATTTAATGNAATTATTGATNCAACTTTAAATT
ATTTAATTGTTGCTGAAAGAAAATGNGATGGTTGTNCTCAATATCCACCTTATTA-----
-----
Length of 5' end seq. 115
3' end seq. ID CFH288Z
3' end seq. 
>CFH288Z.Seq
----------AAANNGGGGNNTTAAAANTTTNNNNNAAAAANTANTNCNTNNTTNAATTT
TNGNNAAAANNNAANNCAAATTTCANNAANANGGNTCCCNAAANTTAATTTTTCCTTTAA
AAAANGTTTTNTTTTANNAATNCCCCCAAAAAANANTTNCCCTNNAATTTTAAAAANNAN
CNAANTTTTTNTTNNNANGGGGATTT
Length of 3' end seq. 196
Connected seq. ID CFH288P
Connected seq. 
>CFH288P.Seq
CAAGTTCAATTATAATTGGATTTGATACATTTAATGNAATTATTGATNCAACTTTAAATT
ATTTAATTGTTGCTGAAAGAAAATGNGATGGTTGTNCTCAATATCCACCTTATTA-----
-----AAANNGGGGNNTTAAAANTTTNNNNNAAAAANTANTNCNTNNTTNAATTTTNGNN
AAAANNNAANNCAAATTTCANNAANANGGNTCCCNAAANTTAATTTTTCCTTTAAAAAAN
GTTTTNTTTTANNAATNCCCCCAAAAAANANTTNCCCTNNAATTTTAAAAANNANCNAAN
TTTTTNTTNNNANGGGGATTT
Length of connected seq. 311
Full length Seq ID -
Full length Seq. -
Length of full length seq. -