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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH274
Library CF
(Link to library)
Clone ID CFH274
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11582-1
Original site URL
Representative seq. ID CFH274Z
(Link to Original site)
Representative DNA sequence 
>CFH274 (CFH274Q) /CSM/CF/CFH2-D/CFH274Q.Seq.d/
XXXXXXXXXXAATTCCACATGTAATGAAATTAAATTGGTGGATTGTGATGATGGCAATCT
CTGTACCAATGATATTTGTGATCCAGCCACTGGAAAATGTTCAAACTTACCAGTGGTTTG
TGAGATTAAAGATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGT
CACCGATAATTGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCAC
ATGTATTCACACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAA
AGTTGATATTGGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGT
TGCAAGTTGTGATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGC
ATTTTGTTTAGTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGT
TTGTATACCTGATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATG
TACATTTAAAGATTTCGATCCACTTCCATTCAGATGTCAATCTGTGGCTGTAAAAGCAGG
TGTTATTGGTGGTGCTGCAATTGCTGGTGTAGTTGTTGGTGGTGCCGTTGCACTTGGTTT
AGCTTTATTTGGTGCTAAAGCTGGTTATAATCATTGGATGTCTTTGAAAAATAATCAGAT
GGCAACCTCATCTGTAAATCCATTATAGAACCATCACCACATCAAGGTACAAATCCACTG
GGAAGCTCCCCAACA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---STCNEIKLVDCDDGNLCTNDICDPATGKCSNLPVVCEIKDACNKPQCDMVTGKCIVT
DNCNDNNICSDDSCSLDGTCIHTKKNCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVA
SCDSNKGCIESPIVCPSSAFCLVAQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCT
FKDFDPLPFRCQSVAVKAGVIGGAAIAGVVVGGAVALGLALFGAKAGYNHWMSLKNNQMA
TSSVNPL*nhhhikvqihweapq
Translated Amino Acid sequence (All Frames) 
Frame A:
---iphvmklnwwivmmaisvpmifviqplenvqtyqwfvrlkmlvtnhnviwslvnals
piivmtityavtivahwmahvftlkrivmmeinvqmifvklilaafivislvnqvqfvwl
qvvirikvvlnhq*svhqvhfv*wlnvm*vmvvvinmikfvylmilivnmvfvitqlknv
hlkisihfhsdvnlwl*kqvllvvlqllv*llvvplhlv*lylvlklviiigcl*kiirw
qphl*ihyrtittsrykstgklpn


Frame B:
---fhm**n*iggl**wqslyq*yl*sshwkmfkltsgl*d*rcl*qttm*yghw*mhch
r*l**q*hmq*r*lligwhmysh*kel**wk*myk*fl*s*ywlrs**yhl*ikfslygc
kl*fe*rly*itnslsikcilfsgsm*crlwwl*si**slyt**sslsiwyl**ln*kmy
i*rfrstsiqmsicgcksrcywwccncwcscwwcrctwfsfiwc*swl*sldvfek*sdg
nlicksiiepsphqgtnplgsspt


Frame C:
---STCNEIKLVDCDDGNLCTNDICDPATGKCSNLPVVCEIKDACNKPQCDMVTGKCIVT
DNCNDNNICSDDSCSLDGTCIHTKKNCDDGNKCTNDFCKVDIGCVHSNITCESSSVCMVA
SCDSNKGCIESPIVCPSSAFCLVAQCDVGYGGCNQYDKVCIPDDPHCQYGICDNSTKKCT
FKDFDPLPFRCQSVAVKAGVIGGAAIAGVVVGGAVALGLALFGAKAGYNHWMSLKNNQMA
TSSVNPL*nhhhikvqihweapq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH274 (CFH274Q) /CSM/CF/CFH2-D/CFH274Q.Seq.d/                       1556   0.0
CFJ814 (CFJ814Q) /CSM/CF/CFJ8-A/CFJ814Q.Seq.d/                       1342   0.0
CFH486 (CFH486Q) /CSM/CF/CFH4-D/CFH486Q.Seq.d/                       1227   0.0
CFH643 (CFH643Q) /CSM/CF/CFH6-B/CFH643Q.Seq.d/                       1223   0.0
SFE881 (SFE881Q) /CSM/SF/SFE8-D/SFE881Q.Seq.d/                       1189   0.0
CHA328 (CHA328Q) /CSM/CH/CHA3-B/CHA328Q.Seq.d/                       1185   0.0
CHG601 (CHG601Q) /CSM/CH/CHG6-A/CHG601Q.Seq.d/                       1096   0.0
CHP202 (CHP202Q) /CSM/CH/CHP2-A/CHP202Q.Seq.d/                        896   0.0
CHH444 (CHH444Q) /CSM/CH/CHH4-B/CHH444Q.Seq.d/                        880   0.0
CHH575 (CHH575Q) /CSM/CH/CHH5-D/CHH575Q.Seq.d/                        874   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Z46933|Z46933.1 Caenorhabditis elegans cosmid F34H10.              42   0.005  2
BX119907|BX119907.8 Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6.    44   0.018  4
AC073968|AC073968.8 Homo sapiens BAC clone RP11-111G20 from 7, complete sequence.    40   0.067  5
AE003555|AE003555.3 Drosophila melanogaster chromosome 3L, section 30 of 83 of the complete sequence.    36   0.075  6
CE345121|CE345121.1 tigr-gss-dog-17000334123182 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.11   2
BQ507132|BQ507132.2 EST614547 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 3' end, mRNA sequence.    42   0.29   2
AL791679|AL791679.2 Xenopus tropicalis EST, clone TNeu097b14 5'.    30   0.29   3
BG597119|BG597119.1 EST495797 cSTS Solanum tuberosum cDNA clone cSTS16L8 5' sequence, mRNA sequence.    42   0.33   2
BQ507131|BQ507131.1 EST614546 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMGO57 5' end, mRNA sequence.    42   0.33   2
AC135249|AC135249.2 Rattus norvegicus clone CH230-383J23, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.91   6
dna update 2004. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                423   e-117
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                191   3e-47
(Q557E9) RecName: Full=Protein psiG; Flags: Precursor;  &AC11568...   132   1e-29
(Q54P69) RecName: Full=Protein psiM; Flags: Precursor;                129   1e-28
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos...   115   2e-24
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor;  &AC11695...   114   3e-24
S44208(S44208) extracellular matrix protein B - Dictyostelium mi...   114   5e-24
(Q94494) RecName: Full=Protein psiH; Flags: Precursor;  &U67940_...   112   2e-23
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso...   110   4e-23
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli...   107   6e-22
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.22  top: 0.70  tms: 0.07  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for CFH274 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFH274Z
3' end seq. 
>CFH274Z.Seq
----------AATTCCACATGTAATGAAATTAAATTGGTGGATTGTGATGATGGCAATCT
CTGTACCAATGATATTTGTGATCCAGCCACTGGAAAATGTTCAAACTTACCAGTGGTTTG
TGAGATTAAAGATGCTTGTAACAAACCACAATGTGATATGGTCACTGGTAAATGCATTGT
CACCGATAATTGTAATGACAATAACATATGCAGTGACGATAGTTGCTCATTGGATGGCAC
ATGTATTCACACTAAAAAGAATTGTGATGATGGAAATAAATGTACAAATGATTTTTGTAA
AGTTGATATTGGCTGCGTTCATAGTAATATCACTTGTGAATCAAGTTCAGTTTGTATGGT
TGCAAGTTGTGATTCGAATAAAGGTTGTATTGAATCACCAATAGTCTGTCCATCAAGTGC
ATTTTGTTTAGTGGCTCAATGTGATGTAGGTTATGGTGGTTGTAATCAATATGATAAAGT
TTGTATACCTGATGATCCTCATTGTCAATATGGTATTTGTGATAACTCAACTAAAAAATG
TACATTTAAAGATTTCGATCCACTTCCATTCAGATGTCAATCTGTGGCTGTAAAAGCAGG
TGTTATTGGTGGTGCTGCAATTGCTGGTGTAGTTGTTGGTGGTGCCGTTGCACTTGGTTT
AGCTTTATTTGGTGCTAAAGCTGGTTATAATCATTGGATGTCTTTGAAAAATAATCAGAT
GGCAACCTCATCTGTAAATCCATTATAGAACCATCACCACATCAAGGTACAAATCCACTG
GGAAGCTCCCCAACA
Length of 3' end seq. 785
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -