CFH272
Library CF
(Link to library)
Clone ID CFH272
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15741-1
Original site URL
Representative seq. ID CFH272E
(Link to Original site)
Representative DNA sequence
>CFH272 (CFH272Q) /CSM/CF/CFH2-C/CFH272Q.Seq.d/
TAGTGAACAAGTTGATAATGCAATCAATGAAATATTAAATGAAAATCAACAAATTACAAA
TATTGATTCAATATACCATTTTGCATTTCAACAAATTACATGTAAAGTTCAAGAAATCAA
TATGAAACATTTAGATATTTCACATGGAGCAAAATCAATGGGAGCAATTAATTTACATAA
TCAATCAATTAAACGTAATTGGAAATTAATTAATTTTGTTATGGCTTCTTCTGCAATTTC
ATTAATAGGTTCAACAGATTTATGTACATATGCTTGTGCAAATACTCTACTAGATTCATT
TTCAAAATACAGAGTATCACTTGGATTACCATCTGCATGTATTAACTTTTGGATCAATTG
AATCTACTGGTTTCGTTTCAAAGAATGAATCAGTTTCAGTATTTTTTAGACGGTGGTGGT
TTCCATCCAACACCAATCAATCAAGTTTTAGGCCTTTTAGATTTACAAATTCAAAATTCT
GGTAAATTCACAAATTCAATGCTTTCAAATTTCAAACCCTCAAAATTTAAAAATAATCAA
CAAATATCATTATTTCTAAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGAACAA
ACTAAAAAAGAGAATATTGGAAATAAAAACATTGATGAATTATTCATTGAGAAAGTTTCA
GAATTATTTTCAACCGATGAATCAAAAATAAATAAAAATCTTAGATTAATCGATTANGGG
GCAGATTCATTAANAATAGNTCAATTAAANAATTGGATAGATAAANAAATTGGNATTNAT
TTAATAACAATTCAACAACTTCNAAATAANACNATGTAATATTTCNATCAAAATGATATT
AAATTCNTTAATGNAAAATAATCAATGTGGAAGGGNAATTTAACNTTTTTTTTTTTCAGG
GAAAAAAAGCGCTATTTTACCTACACTGCTTTGTGAAATTTAAATAAAAAACCAATATCT
AATAATAATAATAATTAATTTATATTTTTAATATGAATGTTTTAATATAATTTATTTAAA
TAATTAAATTCTAAAAATAGCACTTTNNNTNTAAAAAATAAAAANNGCAATAAAAA
sequence update 2003. 5. 3
Translated Amino Acid sequence
**ts**cnq*nik*kstnyky*fnipfcistnym*ssrnqyetfryftwskingsn*ft*
sin*t*lein*fcygffcnfinrfnrfmyiclckystrfifkiqsitwiticmy*LLDQL
NLLVSFQRMNQFQYFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQ
QISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDXG
ADSLXIXQLXNWIDKXIGIXLITIQQLXNXTM*yfxqndikfxnxk*smwkgnltffffr
ekkryftytal*nlnkkpisnnnnn*fifli*mf*ynlfk*lnsknstxxxknkxxnk


Translated Amino Acid sequence (All Frames)
Frame A:
**ts**cnq*nik*kstnyky*fnipfcistnym*ssrnqyetfryftwskingsn*ft*
sin*t*lein*fcygffcnfinrfnrfmyiclckystrfifkiqsitwiticmy*LLDQL
NLLVSFQRMNQFQYFLDGGGFHPTPINQVLGLLDLQIQNSGKFTNSMLSNFKPSKFKNNQ
QISLFLKFDYLMNLKNNSEQTKKENIGNKNIDELFIEKVSELFSTDESKINKNLRLIDXG
ADSLXIXQLXNWIDKXIGIXLITIQQLXNXTM*yfxqndikfxnxk*smwkgnltffffr
ekkryftytal*nlnkkpisnnnnn*fifli*mf*ynlfk*lnsknstxxxknkxxnk


Frame B:
seqvdnaineilnenqqitnidsiyhfafqqitckvqeinmkhldishgaksmgainlhn
qsikrnwklinfvmassaisligstdlctyacantlldsfskyrvslglpsacinfwin*
iywfrfke*isfsif*tvvvsiqhqsikf*af*iykfkilvnsqiqcfqisnpqnlkiin
kyhyf*nlit**i*ktivnklkkrileiktlmnyslrkfqnyfqpmnqk*ikild*sixg
qih*x*xn*xig*ixklxxi**qfnnfxixxcnisikmilnslmxnnqcgrxi*xfffsg
kksailptllcei*iknqyliiiiinlyf*yecfniiylnn*ilkialxx*kikxaik


Frame C:
vnklimqsmky*mkinklqiliqytilhfnklhvkfkksi*ni*ifhmeqnqweqliyii
nqlnvign*lillwlllqfh**vqqiyvhmlvqily*ihfqnteyhldyhlhvltfgsie
stgfvsknesvsvffrrwwfpsntnqssfrpfrftnskfw*ihkfnafkfqtlki*k*st
niiiski*lldefkkq**tn*kreywk*kh**iih*esfriifnr*iknk*ks*inrlxg
rfixnxsikxldr*xnwxxfnnnsttsk*xxvifxsk*y*ix*xkiinvegxfnxfffqg
kkalfylhcfvkfk*ktni*****liyifnmnvli*fi*iikf*k*hfxxkk*kxq*k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH272 (CFH272Q) /CSM/CF/CFH2-C/CFH272Q.Seq.d/ 1150 0.0
AHD242 (AHD242Q) /CSM/AH/AHD2-B/AHD242Q.Seq.d/ 462 e-129
SSE744 (SSE744Q) /CSM/SS/SSE7-B/SSE744Q.Seq.d/ 216 5e-55
CHM295 (CHM295Q) /CSM/CH/CHM2-D/CHM295Q.Seq.d/ 94 5e-18
CHL518 (CHL518Q) /CSM/CH/CHL5-A/CHL518Q.Seq.d/ 60 7e-08
CFC727 (CFC727Q) /CSM/CF/CFC7-B/CFC727Q.Seq.d/ 52 2e-05
SSH688 (SSH688Q) /CSM/SS/SSH6-D/SSH688Q.Seq.d/ 46 0.001
VSK251 (VSK251Q) /CSM/VS/VSK2-C/VSK251Q.Seq.d/ 42 0.017
VSH185 (VSH185Q) /CSM/VS/VSH1-D/VSH185Q.Seq.d/ 42 0.017
VSD688 (VSD688Q) /CSM/VS/VSD6-D/VSD688Q.Seq.d/ 42 0.017

own update 2003. 5.21
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 692 0.0 9
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 74 7e-19 9
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 72 6e-12 14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 2e-04 10
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence. 34 0.017 6
U61958|U61958.1 Caenorhabditis elegans cosmid C25A8, complete sequence. 38 0.022 4
AP003187|AP003187.2 Clostridium perfringens str. 13 DNA, complete genome, section 3/10. 40 0.044 8
AJ303971|AJ303971.1 Plasmodium chabaudi genome survey sequence, clone PC7g1.p1t. 50 0.059 1
BH457794|BH457794.1 BOHFV62TR BOHF Brassica oleracea genomic clone BOHFV62, DNA sequence. 50 0.059 1
AC146332|AC146332.2 Medicago truncatula clone mth2-7l17, WORKING DRAFT SEQUENCE, 20 unordered pieces. 36 0.076 3
dna update 2003. 9. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117176_58(AC117176|pid:none) Dictyostelium discoideum chromoso... 171 4e-64
AC116982_23(AC116982|pid:none) Dictyostelium discoideum chromoso... 247 4e-64
AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso... 222 1e-56
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso... 153 4e-56
AC116982_71(AC116982|pid:none) Dictyostelium discoideum chromoso... 132 1e-49
AC116305_75(AC116305|pid:none) Dictyostelium discoideum chromoso... 91 2e-28
AC116305_81(AC116305|pid:none) Dictyostelium discoideum chromoso... 92 4e-28
AC116963_16(AC116963|pid:none) Dictyostelium discoideum chromoso... 85 5e-26
AC116963_19(AC116963|pid:none) Dictyostelium discoideum chromoso... 81 7e-25
AY495603_1(AY495603|pid:none) Gibberella moniliformis polyketide... 67 8e-10
protein update 2009. 4.11
PSORT

psg: 0.75 gvh: 0.38 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for CFH272 is cyt

5' end seq. ID CFH272F
5' end seq.
>CFH272F.Seq
TAGTGAACAAGTTGATAATGCAATCAATGAAATATTAAATGAAAATCAACAAATTACAAA
TATTGATTCAATATACCATTTTGCATTTCAACAAATTACATGTAAAGTTCAAGAAATCAA
TATGAAACATTTAGATATTTCACATGGAGCAAAATCAATGGGAGCAATTAATTTACATAA
TCAATCAATTAAACGTAATTGGAAATTAATTAATTTTGTTATGGCTTCTTCTGCAATTTC
ATTAATAGGTTCAACAGATTTATGTACATATGCTTGTGCAAATACTCTACTAGATTCATT
TTCAAAATACAGAGTATCACTTGGATTACCATCTGCATGTATTAACTTTTGGATCAATTG
AATCTACTGGTTTCGTTTCAAAGAATGAATCAGTTTCAGTATTTTTTAGACGGTGGTGGT
TTCCATCCAACACCAATCAATCAAGTTTTAGGCCTTTTAGATTTACAAATTCAAAATTCT
GGTAAATTCACAAATTCAATGCTTTCAAATTTCAAACCCTCAAAATTTAAAAATAATCAA
CAAATATCATTATTTCTAAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGAACAA
ACTAAAAAAGAGAATATTGGAAATAAAAACATTGATGAATTATTCATTGAGAAAGTTTCA
GAATTATTTTCAACCGATGAATCAAAAATAAATAAAAATCTTANNNNNNNNNN
Length of 5' end seq. 713
3' end seq. ID CFH272Z
3' end seq.
>CFH272Z.Seq
----------CAAATTCAATGCTTTCAAATTTCAAACCCNCAAAATTTAAAAATAATCAA
CAAATATCATTATTTNTAAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGNACNA
ACTAAAAAANAGAATATTGGNAATAAAAACATTGATGAATTATTCATTGANAAAGTTTCA
NAATTNTTTTCAACCGATGAATCAAAAATAAATAAAAATNTTAGATTAATCGATTANGGG
GCAGATTCATTAANAATAGNTCAATTAAANAATTGGATAGATAAANAAATTGGNATTNAT
TTAATAACAATTCAACAACTTCNAAATAANACNATGTAATATTTCNATCAAAATGATATT
AAATTCNTTAATGNAAAATAATCAATGTGGAAGGGNAATTTAACNTTTTTTTTTTTCAGG
GAAAAAAAGCGCTATTTTACCTACACTGCTTTGTGAAATTTAAATAAAAAACCAATATCT
AATAATAATAATAATTAATTTATATTTTTAATATGAATGTTTTAATATAATTTATTTAAA
TAATTAAATTCTAAAAATAGCACTTTNNNTNTAAAAAATAAAAANNGCAATAAAAA
Length of 3' end seq. 586
Connected seq. ID CFH272P
Connected seq.
>CFH272P.Seq
TAGTGAACAAGTTGATAATGCAATCAATGAAATATTAAATGAAAATCAACAAATTACAAA
TATTGATTCAATATACCATTTTGCATTTCAACAAATTACATGTAAAGTTCAAGAAATCAA
TATGAAACATTTAGATATTTCACATGGAGCAAAATCAATGGGAGCAATTAATTTACATAA
TCAATCAATTAAACGTAATTGGAAATTAATTAATTTTGTTATGGCTTCTTCTGCAATTTC
ATTAATAGGTTCAACAGATTTATGTACATATGCTTGTGCAAATACTCTACTAGATTCATT
TTCAAAATACAGAGTATCACTTGGATTACCATCTGCATGTATTAACTTTTGGATCAATTG
AATCTACTGGTTTCGTTTCAAAGAATGAATCAGTTTCAGTATTTTTTAGACGGTGGTGGT
TTCCATCCAACACCAATCAATCAAGTTTTAGGCCTTTTAGATTTACAAATTCAAAATTCT
GGTAAATTCACAAATTCAATGCTTTCAAATTTCAAACCCTCAAAATTTAAAAATAATCAA
CAAATATCATTATTTCTAAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGAACAA
ACTAAAAAAGAGAATATTGGAAATAAAAACATTGATGAATTATTCATTGAGAAAGTTTCA
GAATTATTTTCAACCGATGAATCAAAAATAAATAAAAATCTTA----------CAAATTC
AATGCTTTCAAATTTCAAACCCNCAAAATTTAAAAATAATCAACAAATATCATTATTTNT
AAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGNACNAACTAAAAAANAGAATAT
TGGNAATAAAAACATTGATGAATTATTCATTGANAAAGTTTCANAATTNTTTTCAACCGA
TGAATCAAAAATAAATAAAAATNTTAGATTAATCGATTANGGGGCAGATTCATTAANAAT
AGNTCAATTAAANAATTGGATAGATAAANAAATTGGNATTNATTTAATAACAATTCAACA
ACTTCNAAATAANACNATGTAATATTTCNATCAAAATGATATTAAATTCNTTAATGNAAA
ATAATCAATGTGGAAGGGNAATTTAACNTTTTTTTTTTTCAGGGAAAAAAAGCGCTATTT
TACCTACACTGCTTTGTGAAATTTAAATAAAAAACCAATATCTAATAATAATAATAATTA
ATTTATATTTTTAATATGAATGTTTTAATATAATTTATTTAAATAATTAAATTCTAAAAA
TAGCACTTTNNNTNTAAAAAATAAAAANNGCAATAAAAA
Length of connected seq. 1289
Full length Seq ID CFH272E
Full length Seq.
>CFH272E.Seq
TAGTGAACAAGTTGATAATGCAATCAATGAAATATTAAATGAAAATCAACAAATTACAAA
TATTGATTCAATATACCATTTTGCATTTCAACAAATTACATGTAAAGTTCAAGAAATCAA
TATGAAACATTTAGATATTTCACATGGAGCAAAATCAATGGGAGCAATTAATTTACATAA
TCAATCAATTAAACGTAATTGGAAATTAATTAATTTTGTTATGGCTTCTTCTGCAATTTC
ATTAATAGGTTCAACAGATTTATGTACATATGCTTGTGCAAATACTCTACTAGATTCATT
TTCAAAATACAGAGTATCACTTGGATTACCATCTGCATGTATTAACTTTTGGATCAATTG
AATCTACTGGTTTCGTTTCAAAGAATGAATCAGTTTCAGTATTTTTTAGACGGTGGTGGT
TTCCATCCAACACCAATCAATCAAGTTTTAGGCCTTTTAGATTTACAAATTCAAAATTCT
GGTAAATTCACAAATTCAATGCTTTCAAATTTCAAACCCTCAAAATTTAAAAATAATCAA
CAAATATCATTATTTCTAAAATTTGATTACTTGATGAATTTAAAAAACAATAGTGAACAA
ACTAAAAAAGAGAATATTGGAAATAAAAACATTGATGAATTATTCATTGAGAAAGTTTCA
GAATTATTTTCAACCGATGAATCAAAAATAAATAAAAATCTTAGATTAATCGATTANGGG
GCAGATTCATTAANAATAGNTCAATTAAANAATTGGATAGATAAANAAATTGGNATTNAT
TTAATAACAATTCAACAACTTCNAAATAANACNATGTAATATTTCNATCAAAATGATATT
AAATTCNTTAATGNAAAATAATCAATGTGGAAGGGNAATTTAACNTTTTTTTTTTTCAGG
GAAAAAAAGCGCTATTTTACCTACACTGCTTTGTGAAATTTAAATAAAAAACCAATATCT
AATAATAATAATAATTAATTTATATTTTTAATATGAATGTTTTAATATAATTTATTTAAA
TAATTAAATTCTAAAAATAGCACTTTNNNTNTAAAAAATAAAAANNGCAATAAAAA
Length of full length seq. 1076