>CFH269 (CFH269Q) /CSM/CF/CFH2-C/CFH269Q.Seq.d/
ATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGGGCCNTTTTTTTNNNNAAAAAAAAAAAAAAAANGGGGTTTTTNNNTTTTTTTN
CCCCCCCCCCCCCNNNAAAAAAAXXXXXXXXXXTTTGAAAAAGAAACCGGACTTGATATA
CCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATT
GTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGT
CTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGAT
TTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCA
CGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGA
TATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAA
AAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGG
AAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGA
AATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAA
AGAGTATTAATTAGACATGGT

FNIYISLEKKKKKKKKKKKKKXGXFFXXKKKKXGVFXFFXPPPPXKK---

---FEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGW
VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQAC
LDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIAS
YTLPNLPDIVVQRVLIRHG

Frame A:
i*ylykfgkkkkkkkkkkkkkxgpffxxkkkkkxgfxxfxppppxxk---

---FEKETGLDIPIHVDAASGGFVAPFLQPEIVWDFRLPRVKSINGSGHKFGLSPLGVGW
VVWRGKNDIHKDLVFDVNYLGGNMPTFSLNFSRPGGQIVCQYYNFLRHGRSGYTAVHQAC
LDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIAS
YTLPNLPDIVVQRVLIRHG

Frame B:
FNIYISLEKKKKKKKKKKKKKXGXFFXXKKKKXGVFXFFXPPPPXKK---

---lkkkpdliyqfmsmqqvvvslhpffnqklfgildyhvlnqlmalvinlvylhwelag
sygevkmtftriwysmstilvaicqhfh*ishvqvvk*yastitfcamvvvdipqfiklv
*imvfsfpsklkntvflilfmmvlvhfqvhvgn*kkmqk*nsisltfqie*eievgklhp
ilyqtyqil*fkey*ldm

Frame C:
lifi*vwkkkkkkkkkkkkkkxaxfxxkkkkkxgfxxffxppppxkk---

---*krnrt*ytnscrcskwwfrctlsstrnclgf*tttc*in*wlws*iwsisigswlg
rmer*k*hsqgfgircqlswwqyanifiefltsrwsnsmpvl*lfapws*wiyrssssls
rswyfhfqas*ktryf*ycl*wywctsrcmleiekrckskiqsl*pfr*nek*rlancil
ystkltrycssksin*tw

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFG840 (SFG840Q) /CSM/SF/SFG8-B/SFG840Q.Seq.d/                       1166   0.0
SFG754 (SFG754Q) /CSM/SF/SFG7-C/SFG754Q.Seq.d/                       1166   0.0
SFE561 (SFE561Q) /CSM/SF/SFE5-C/SFE561Q.Seq.d/                       1166   0.0
SFD593 (SFD593Q) /CSM/SF/SFD5-D/SFD593Q.Seq.d/                       1166   0.0
SFD334 (SFD334Q) /CSM/SF/SFD3-B/SFD334Q.Seq.d/                       1166   0.0
SFC434 (SFC434Q) /CSM/SF/SFC4-B/SFC434Q.Seq.d/                       1166   0.0
SFC433 (SFC433Q) /CSM/SF/SFC4-B/SFC433Q.Seq.d/                       1166   0.0
SFC221 (SFC221Q) /CSM/SF/SFC2-A/SFC221Q.Seq.d/                       1166   0.0
SFA821 (SFA821Q) /CSM/SF/SFA8-A/SFA821Q.Seq.d/                       1166   0.0
CHE432 (CHE432Q) /CSM/CH/CHE4-B/CHE432Q.Seq.d/                       1166   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AR375678|AR375678.1 Sequence 684 from patent US 6605709.           56   9e-12  3
BG138757|BG138757.1 EST479199 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP11A1 5' sequence, mRNA sequence.    66   1e-09  2
CF811515|CF811515.1 NA716 cDNA non acclimated Bluecrop library Vaccinium corymbosum cDNA 5', mRNA sequence.    70   1e-08  2
AF352732|AF352732.1 Nicotiana tabacum glutamate decarboxylase isozyme 3 mRNA, complete cds.    58   2e-07  2
CK273593|CK273593.1 EST719671 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADC22 5' end, mRNA sequence.    50   2e-07  2
CD008053|CD008053.1 VVB082D05_335234 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB082D05 5, mRNA sequence.    64   6e-07  2
CD006712|CD006712.1 VVB066D06_332552 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB066D06 5, mRNA sequence.    64   6e-07  2
CD719214|CD719214.1 VVB158G03_410335 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB158G03 5, mRNA sequence.    64   6e-07  2
CA813481|CA813481.1 CA48LN10IF-E8 Cabernet Sauvignon Leaf - CA48LN Vitis vinifera cDNA clone CA48LN10IF-E8 5', mRNA sequence.    64   7e-07  2
CB341828|CB341828.2 CA32EN0002_IIIbF_E01 Cabernet Sauvignon Leaf - CA32EN Vitis vinifera cDNA clone CA32EN0002_IIIbF_E01 5', mRNA sequence.    64   8e-07  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM178379_1197(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ...   296   6e-79
CP000020_1061(CP000020|pid:none) Vibrio fischeri ES114 chromosom...   293   5e-78
CP000789_2953(CP000789|pid:none) Vibrio harveyi ATCC BAA-1116 ch...   289   7e-77
CP000851_2941(CP000851|pid:none) Shewanella pealeana ATCC 700345...   288   2e-76
CP001358_45(CP001358|pid:none) Desulfovibrio desulfuricans subsp...   286   5e-76
CR522870_385(CR522870|pid:none) Desulfotalea psychrophila LSv54 ...   280   4e-74
AM942759_1390(AM942759|pid:none) Proteus mirabilis strain HI4320...   273   4e-72
CP000439_1647(CP000439|pid:none) Francisella tularensis subsp. n...   273   4e-72
CP000608_56(CP000608|pid:none) Francisella tularensis subsp. tul...   270   3e-71
AJ749949_1722(AJ749949|pid:none) Francisella tularensis subsp. t...   267   3e-70

 psg: 0.03  gvh: 0.29  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.74  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: cytoplasmic

>> prediction for CFH269 is nuc

>CFH269F.Seq
ATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGGGCCNTTTTTTTNNNNAAAAAAAAAAAAAAAANGGGGTTTTTNNNTTTTTTTN
CCCCCCCCCCCCCNNNAAAAAAA----------

>CFH269Z.Seq
----------TTTGAAAAAGAAACCGGACTTGATATACCAATTCATGTCGATGCAGCAAG
TGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATTGTTTGGGATTTTAGACTACCACG
TGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGTCTATCTCCATTGGGAGTTGGCTG
GGTCGTATGGAGAGGTAAAAATGACATTCACAAGGATTTGGTATTCGATGTCAACTATCT
TGGTGGCAATATGCCAACATTTTCATTGAATTTCTCACGTCCAGGTGGTCAAATAGTATG
CCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGATATACCGCAGTTCATCAAGCTTG
TCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAAAAACACGGTATTTTTGATATTGT
TTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGGAAATTGAAAAAAGATGCAAAAGT
AAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGAAATAGAGGTTGGCAAATTGCATC
CTATACTCTACCAAACTTACCAGATATTGTAGTTCAAAGAGTATTAATTAGACATGGT

>CFH269P.Seq
ATTTAATATTTATATAAGTTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAANGGGCCNTTTTTTTNNNNAAAAAAAAAAAAAAAANGGGGTTTTTNNNTTTTTTTN
CCCCCCCCCCCCCNNNAAAAAAA----------TTTGAAAAAGAAACCGGACTTGATATA
CCAATTCATGTCGATGCAGCAAGTGGTGGTTTCGTTGCACCCTTTCTTCAACCAGAAATT
GTTTGGGATTTTAGACTACCACGTGTTAAATCAATTAATGGCTCTGGTCATAAATTTGGT
CTATCTCCATTGGGAGTTGGCTGGGTCGTATGGAGAGGTAAAAATGACATTCACAAGGAT
TTGGTATTCGATGTCAACTATCTTGGTGGCAATATGCCAACATTTTCATTGAATTTCTCA
CGTCCAGGTGGTCAAATAGTATGCCAGTACTATAACTTTTTGCGCCATGGTCGTAGTGGA
TATACCGCAGTTCATCAAGCTTGTCTAGATCATGGTATTTTCATTTCCAAGCAAGTTAAA
AAACACGGTATTTTTGATATTGTTTATGATGGTACTGGTGCACTTCCAGGTGCATGTTGG
AAATTGAAAAAAGATGCAAAAGTAAAATTCAATCTCTTTGACCTTTCAGATAGAATGAGA
AATAGAGGTTGGCAAATTGCATCCTATACTCTACCAAACTTACCAGATATTGTAGTTCAA
AGAGTATTAATTAGACATGGT