CFH256
Library CF
(Link to library)
Clone ID CFH256
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15622-1
Original site URL
Representative seq. ID CFH256F
(Link to Original site)
Representative DNA sequence
>CFH256 (CFH256Q) /CSM/CF/CFH2-C/CFH256Q.Seq.d/
ATAATAAATAATAAAATAATTCCCAAGTTCATATAGTAGTAATAATAGTTATAAATAATA
ATAATAAATTAAAAATGGCAACAAGTTTAAGAGAGCTTTGTAAAGATAGAATTTTAAATG
AAATGGTTAGAACTATTACACCAGAAGCAAGTAATGGTTGGAAAGCTTTGATTGTAGATC
AAGATTCACTTAGAGTTATTTCAGCATGTTGCGGAATGTTTGATATTATGGAAGAGAAAG
TTACAGTTGTTGAAAAAATTGATAATCCAAGACAACGTCTACCAAATTTAGAAGCAATTT
ATTTTCTTACACCAACTGCACAATCAATTGATTTATTAATTAATGATTTTAAAAAGAAAT
CTAGCCCACATTATTTAGCAATTCACTTATTTTTAACTTCAAAATTACCAGAAGTAGAAT
TTAAAAAATTATCAGCGTCATTAGCAGTACATAGAATTAAAACATTTAAAGAGATTAATT
TAGAATTTTTAGCGATTGAAAGTCAAGCATTTCATTTAGATCAAAATAATACATTATTTC
AATTATTTTCACCAGATTCAATCGATCCAACAGAGGAGCAAGCAAAGATTGCAACACGTT
TAGTATCGTTATGTGTATCATTGAATGAATXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
nk**NNSQVHIVVIIVINNNNKLKMATSLRELCKDRILNEMVRTITPEASNGWKALIVDQ
DSLRVISACCGMFDIMEEKVTVVEKIDNPRQRLPNLEAIYFLTPTAQSIDLLINDFKKKS
SPHYLAIHLFLTSKLPEVEFKKLSASLAVHRIKTFKEINLEFLAIESQAFHLDQNNTLFQ
LFSPDSIDPTEEQAKIATRLVSLCVSLNE---


Translated Amino Acid sequence (All Frames)
Frame A:
iinnkiipkfi*****l*iiiin*kwqqv*esfvkief*mkwlellhqkqvmvgkl*l*i
kihlelfqhvaeclilwkrklqllkkliiqdnvyqi*kqfiflhqlhnqliy*lmilkrn
lahii*qftyf*lqnyqk*nlknyqrh*qyielkhlkrli*nf*rlkvkhfi*ikiihyf
nyfhqiqsiqqrskqrlqhv*yryvyh*m---


Frame B:
**iik*fpssyssnnsyk****ikngnkfkral*r*nfk*ng*nyytrsk*wlesfdcrs
rft*syfsmlrnv*yygresysc*kn**skttstkfrsnlfsytnctin*fin**f*kei
*ptlfsnslifnfkitrsri*kiisvisst*n*ni*rd*frifsd*kssisfrsk*yiis
iiftrfnrsnrgaskdcntfsivmciie*---


Frame C:
nk**NNSQVHIVVIIVINNNNKLKMATSLRELCKDRILNEMVRTITPEASNGWKALIVDQ
DSLRVISACCGMFDIMEEKVTVVEKIDNPRQRLPNLEAIYFLTPTAQSIDLLINDFKKKS
SPHYLAIHLFLTSKLPEVEFKKLSASLAVHRIKTFKEINLEFLAIESQAFHLDQNNTLFQ
LFSPDSIDPTEEQAKIATRLVSLCVSLNE---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH256 (CFH256Q) /CSM/CF/CFH2-C/CFH256Q.Seq.d/ 1098 0.0
CFJ307 (CFJ307Q) /CSM/CF/CFJ3-A/CFJ307Q.Seq.d/ 1092 0.0
CHE855 (CHE855Q) /CSM/CH/CHE8-C/CHE855Q.Seq.d/ 1066 0.0
CFH310 (CFH310Q) /CSM/CF/CFH3-A/CFH310Q.Seq.d/ 1009 0.0
SLD233 (SLD233Q) /CSM/SL/SLD2-B/SLD233Q.Seq.d/ 264 1e-69
VFL712 (VFL712Q) /CSM/VF/VFL7-A/VFL712Q.Seq.d/ 40 0.040
VSD163 (VSD163Q) /CSM/VS/VSD1-C/VSD163Q.Seq.d/ 38 0.16
VHP474 (VHP474Q) /CSM/VH/VHP4-D/VHP474Q.Seq.d/ 38 0.16
VHH214 (VHH214Q) /CSM/VH/VHH2-A/VHH214Q.Seq.d/ 36 0.63
VFN406 (VFN406Q) /CSM/VF/VFN4-A/VFN406Q.Seq.d/ 36 0.63

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AR409405|AR409405.1 Sequence 1 from patent US 6632935. 36 4e-05 17
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid. 36 4e-05 17
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence. 30 4e-05 14
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 34 9e-05 10
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2. 32 1e-04 16
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence. 32 2e-04 12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 36 2e-04 14
AC024557|AC024557.1 Homo sapiens chromosome 18 clone RP11-152G13 map 18, LOW-PASS SEQUENCE SAMPLING. 34 3e-04 5
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome. 34 0.001 18
AC024301|AC024301.10 Homo sapiens, clone RP11-686O16, complete sequence. 38 0.003 8
dna update 2004. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54QC8) RecName: Full=Protein transport protein sec1; 363 2e-99
BC097221_1(BC097221|pid:none) Danio rerio zgc:114171, mRNA (cDNA... 139 5e-32
(Q28288) RecName: Full=Syntaxin-binding protein 2; AltName: Full... 138 1e-31
BC171526_1(BC171526|pid:none) Danio rerio si:rp71-10d23.3, mRNA ... 137 3e-31
BC134211_1(BC134211|pid:none) Danio rerio novel protein similar ... 137 3e-31
AY429591_1(AY429591|pid:none) Haemonchus contortus UNC-18 (unc-1... 136 4e-31
BC080023_1(BC080023|pid:none) Xenopus laevis hypothetical protei... 135 1e-30
BC121967_1(BC121967|pid:none) Xenopus tropicalis syntaxin bindin... 134 2e-30
AB002559_1(AB002559|pid:none) Homo sapiens mRNA for hunc18b2, co... 133 4e-30
(Q15833) RecName: Full=Syntaxin-binding protein 2; AltName: Full... 133 4e-30
protein update 2009. 5.14
PSORT

psg: 0.93 gvh: 0.29 alm: 0.45 top: 0.63 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for CFH256 is cyt

5' end seq. ID CFH256F
5' end seq.
>CFH256F.Seq
ATAATAAATAATAAAATAATTCCCAAGTTCATATAGTAGTAATAATAGTTATAAATAATA
ATAATAAATTAAAAATGGCAACAAGTTTAAGAGAGCTTTGTAAAGATAGAATTTTAAATG
AAATGGTTAGAACTATTACACCAGAAGCAAGTAATGGTTGGAAAGCTTTGATTGTAGATC
AAGATTCACTTAGAGTTATTTCAGCATGTTGCGGAATGTTTGATATTATGGAAGAGAAAG
TTACAGTTGTTGAAAAAATTGATAATCCAAGACAACGTCTACCAAATTTAGAAGCAATTT
ATTTTCTTACACCAACTGCACAATCAATTGATTTATTAATTAATGATTTTAAAAAGAAAT
CTAGCCCACATTATTTAGCAATTCACTTATTTTTAACTTCAAAATTACCAGAAGTAGAAT
TTAAAAAATTATCAGCGTCATTAGCAGTACATAGAATTAAAACATTTAAAGAGATTAATT
TAGAATTTTTAGCGATTGAAAGTCAAGCATTTCATTTAGATCAAAATAATACATTATTTC
AATTATTTTCACCAGATTCAATCGATCCAACAGAGGAGCAAGCAAAGATTGCAACACGTT
TAGTATCGTTATGTGTATCATTGAATGAAT----------
Length of 5' end seq. 630
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -