CFH244
Library CF
(Link to library)
Clone ID CFH244
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFH244F
(Link to Original site)
Representative DNA sequence
>CFH244 (CFH244Q) /CSM/CF/CFH2-B/CFH244Q.Seq.d/
ATTGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ivvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcxysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame B:
l*yfvxiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame C:
csilxifklnintikks*n*ickinl*qklvi*kkknqkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/ 149 1e-35
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/ 149 1e-35
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/ 149 1e-35
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/ 149 1e-35
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/ 149 1e-35
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/ 149 1e-35
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/ 149 1e-35
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/ 149 1e-35
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/ 149 1e-35
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/ 149 1e-35

own update 2002.11.18
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115685|AC115685.1 Dictyostelium discoideum chromosome 2 map 4718821-4752388 strain AX4, complete sequence. 82 2e-29 3
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 82 4e-29 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 9e-27 2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 82 1e-26 6
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 82 2e-12 1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 80 8e-12 1
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING. 46 0.11 1
AC137670|AC137670.5 Medicago truncatula clone mth2-14g3, WORKING DRAFT SEQUENCE, 15 unordered pieces. 28 0.12 9
BM424783|BM424783.1 IpSpn00680 Spleen cDNA library Ictalurus punctatus cDNA 5', mRNA sequence. 28 0.20 3
AF031860|AF031860.1 Rhipicephalus compositus 12S ribosomal RNA gene, mitochondrial gene for mitochondrial RNA, partial sequence. 40 0.28 2
dna update 2004. 1.31
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 58,098,137
protein update 2009. 5.14
PSORT -
5' end seq. ID CFH244F
5' end seq.
>CFH244F.Seq
ATTGTAGTATTTTGTTNATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -