>CFH242 (CFH242Q) /CSM/CF/CFH2-B/CFH242Q.Seq.d/
XXXXXXXXXXTGCGCATCAGGTTCAGTTGTTGAACAATGTTCATCAGTCGATTCAATTAG
TAATTTACCAACCACAATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGC
AATGGATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCC
AGTTTACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAA
GATGTGTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGC
CTCTGTTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTA
TATCCTCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGC
CATCTTTTTCTTTGCTATCTTTTTTGAACTCGAAAAAACCCTTAGAAGTATTTTAGAAAA
AAGATGGACTCCAAACAAAAAAGATTCAGACGATAATAATTTAATTAATTCATCTTTCTT
AAGTGGTTCTTATCCAAAATTCTCTTATAGAGATATAATTAGAGGATGTTTACATGCTAT
CGAACTAACATGTAGTTATGCTTTAATGCTTGTTGCAATGACATTTAATGTTGCACTCTT

---ASGSVVEQCSSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPV
YSSLCMAMPDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYI
LFKSWVPRTDRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSDDNNLINSSFLS
GSYPKFSYRDIIRGCLHAIELTCSYALMLVAMTFNVAL

Frame A:
---ahqvqllnnvhqsiqlviyqpqcnyslvlkvfaqrwqwmvvrnvqeihqlppvmfcq
ftppfvwlclichnvpigprcvpplvnsttlkshqtivspllltpfqs*ectftlvswti
sslnlgyqeltvnllvhglpsfsllsflnskkplevf*kkdglqtkkiqtiii*lihls*
vvliqnsliei*ledvymlsn*hvvml*cllq*hlmlhs


Frame B:
---rirfsc*tmfisrfn**ftnhnaiirwy*kylhrdgngwl*emfrkftnyhl*cfas
lllplygya*yvtmcqldqdvfllwstlqlsnhirllcrlcc*rrsnhenvlshwylgly
pl*ilgtkn*psicwfmvchlflcylf*trknp*kyfrkkmdskqkrfrr**fn*fiflk
wflskill*ryn*rmftcyrtnm*lcfnaccndi*cctl


Frame C:
---ASGSVVEQCSSVDSISNLPTTMQLFAGIKSICTEMAMDGCEKCSGNSPTTTCDVLPV
YSSLCMAMPDMSQCANWTKMCSSSGQLYNSQITSDYCVASVADAVPIMRMYFHTGILDYI
LFKSWVPRTDRQFAGSWFAIFFFAIFFELEKTLRSILEKRWTPNKKDSDDNNLINSSFLS
GSYPKFSYRDIIRGCLHAIELTCSYALMLVAMTFNVAL

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH242 (CFH242Q) /CSM/CF/CFH2-B/CFH242Q.Seq.d/                       1289   0.0
VFF667 (VFF667Q) /CSM/VF/VFF6-C/VFF667Q.Seq.d/                       1277   0.0
SFH236 (SFH236Q) /CSM/SF/SFH2-B/SFH236Q.Seq.d/                       1275   0.0
VHE424 (VHE424Q) /CSM/VH/VHE4-A/VHE424Q.Seq.d/                       1269   0.0
VFD235 (VFD235Q) /CSM/VF/VFD2-B/VFD235Q.Seq.d/                       1269   0.0
VFE385 (VFE385Q) /CSM/VF/VFE3-D/VFE385Q.Seq.d/                       1265   0.0
VHM772 (VHM772Q) /CSM/VH/VHM7-C/VHM772Q.Seq.d/                       1263   0.0
VFC744 (VFC744Q) /CSM/VF/VFC7-B/VFC744Q.Seq.d/                       1261   0.0
VFJ390 (VFJ390Q) /CSM/VF/VFJ3-D/VFJ390Q.Seq.d/                       1251   0.0
VFI662 (VFI662Q) /CSM/VF/VFI6-C/VFI662Q.Seq.d/                       1223   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ315489|AJ315489.1 Dictyostelium discoideum mRNA for p80 protein.  1281   0.0    3
AP003189|AP003189.2 Clostridium perfringens str. 13 DNA, complete genome, section 5/10.    34   0.11   10
AC083909|AC083909.20 Mus musculus 1 BAC RP23-424A2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence.    38   0.39   5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   0.41   14
CA842637|CA842637.1 iq45c01.y1 HR85 islet Homo sapiens cDNA clone IMAGE: 5' similar to TR:Q9VWD5 Q9VWD5 CG14232 PROTEIN. ;, mRNA sequence.    46   0.62   1
AY379775|AY379775.1 Medicago truncatula chromosome 5 clone MtH1-041N12 strain Jemalong A17, WORKING DRAFT SEQUENCE, 49 unordered pieces.    34   0.94   6
AL713905|AL713905.3 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto  from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza  sativa (rice).    40   1.6    3
AL844603|AL844603.4 Mouse DNA sequence from clone RP24-334I20 on chromosome 2.    30   1.7    7
AC105102|AC105102.1 Homo sapiens chromosome 17 clone RP11-316K20 map 17, LOW-PASS SEQUENCE SAMPLING.    38   1.8    3
AL731887|AL731887.5 Oryza sativa chromosome 12, . BAC OJ1559_C07 of library Monsanto  from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza  sativa (rice).    40   1.9    3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7YXD4) RecName: Full=Protein P80; AltName: Full=Endosomal memb...   421   e-117
DQ646486_1(DQ646486|pid:none) Chlamydomonas reinhardtii transmem...    83   6e-15
T32929(T32929)hypothetical protein K12C11.3 - Caenorhabditis ele...    47   5e-04
Z68217_7(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c...    47   6e-04
DQ443363_1(DQ443363|pid:none) Bombyx mori copper transporter mRN...    44   0.004
Z68217_5(Z68217|pid:none) Caenorhabditis elegans Cosmid F58G6, c...    39   0.10
T22950(T22950)hypothetical protein F58G6.2 - Caenorhabditis eleg...    39   0.10
AM910994_672(AM910994|pid:none) Plasmodium knowlesi strain H chr...    37   0.38
AE014298_950(AE014298|pid:none) Drosophila melanogaster chromoso...    37   0.50
BC152191_1(BC152191|pid:none) Danio rerio solute carrier family ...    35   2.5

 psg: 0.75  gvh: 0.45  alm: 0.31  top: 0.53  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: nuclear
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFH242 is end

>CFH242Z.Seq
----------TGCGCATCAGGTTCAGTTGTTGAACAATGTTCATCAGTCGATTCAATTAG
TAATTTACCAACCACAATGCAATTATTCGCTGGTATTAAAAGTATTTGCACAGAGATGGC
AATGGATGGTTGTGAGAAATGTTCAGGAAATTCACCAACTACCACCTGTGATGTTTTGCC
AGTTTACTCCTCCCTTTGTATGGCTATGCCTGATATGTCACAATGTGCCAATTGGACCAA
GATGTGTTCCTCCTCTGGTCAACTCTACAACTCTCAAATCACATCAGACTATTGTGTCGC
CTCTGTTGCTGACGCCGTTCCAATCATGAGAATGTACTTTCACACTGGTATCTTGGACTA
TATCCTCTTTAAATCTTGGGTACCAAGAACTGACCGTCAATTTGCTGGTTCATGGTTTGC
CATCTTTTTCTTTGCTATCTTTTTTGAACTCGAAAAAACCCTTAGAAGTATTTTAGAAAA
AAGATGGACTCCAAACAAAAAAGATTCAGACGATAATAATTTAATTAATTCATCTTTCTT
AAGTGGTTCTTATCCAAAATTCTCTTATAGAGATATAATTAGAGGATGTTTACATGCTAT
CGAACTAACATGTAGTTATGCTTTAATGCTTGTTGCAATGACATTTAATGTTGCACTCTT