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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH239
Library CF
(Link to library)
Clone ID CFH239
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFH239P
(Link to Original site)
Representative DNA sequence 
>CFH239 (CFH239Q) /CSM/CF/CFH2-B/CFH239Q.Seq.d/
ATTAAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTNATTAATTTTTTAAT
GGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTC
TTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCAC
TACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACT
TGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGG
TAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAG
AATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCG
TTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCT
CCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGT
ATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTXXXX
XXXXXXGCTCAACAAGGTTNTCAAGCATGGAAANAAGGNGTCAATNANATTGGTGATGAN
ATCGCCAANNCTGCNCATNATGTAGGTGATGGTTTNNCCNANACTGCNCGTTAAGTAGGT
NATGGAATTANAATCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNAANAA
ACTTGGGTNAANAAATATTAAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACAAANA
ATGGCTNAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAANACGATTG
CAAANAAACANANAAANACNANAGCCNATTNNAACTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
*iiiffifiiynlixlif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASF---

---AQQGXQAWKXGVNXIGDXIAXXAHXVGDGXXXTAR*vgxgixipakegyxlxkxgax
xtwvxky*rlsxixixkaxqxmaxqxxxxrfmqxxsxxxrlqxnxxxxxpixt
Translated Amino Acid sequence (All Frames) 
Frame A:
ik*lfflsslyti*fx*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fash
ys*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*
nc*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihs
milliqmkmvwdgislhl---

---AQQGXQAWKXGVNXIGDXIAXXAHXVGDGXXXTAR*vgxgixipakegyxlxkxgax
xtwvxky*rlsxixixkaxqxmaxqxxxxrfmqxxsxxxrlqxnxxxxxpixt

Frame B:
lnnyffylhyiqfnxinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhpt
thnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdr
iadhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv
*yclsr*kwfgmgypcif---

---lnkvxkhgxkxsxxlvmxspxlxxm*vmvxpxlxvk*vmelxslqrrdxnslxmelx
klgxxnikgypxxkxkkpxkxwlnxxkxxglcxxkvkxxdckxtxkxxsxxxl

Frame C:
*iiiffifiiynlixlif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipl
liifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeie
llitvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQY
DTAYPDENGLGWDILASF---

---strxssmexrxqxxw**xrqxcxxcr*wfxxxcxlsrxwnxnpckggixtx*xwsxx
nlgxxilkvilxxnxksptxngxtxxxxkvyaxxkxxxtiaxkxxxtxaxxnl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH239 (CFH239Q) /CSM/CF/CFH2-B/CFH239Q.Seq.d/                       1469   0.0
SFL412 (SFL412Q) /CSM/SF/SFL4-A/SFL412Q.Seq.d/                       1136   0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/                       1136   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1136   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1136   0.0
SFJ191 (SFJ191Q) /CSM/SF/SFJ1-D/SFJ191Q.Seq.d/                       1136   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1136   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1136   0.0
SFF510 (SFF510Q) /CSM/SF/SFF5-A/SFF510Q.Seq.d/                       1136   0.0
SFE450 (SFE450Q) /CSM/SF/SFE4-C/SFE450Q.Seq.d/                       1136   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    64   4e-06  1
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***.    64   4e-06  1
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    52   0.014  1
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    34   0.023  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    42   0.045  10
BH689643|BH689643.1 BOMDR69TF BO_2_3_KB Brassica oleracea genomic clone BOMDR69, DNA sequence.    50   0.057  1
BH530565|BH530565.1 BOGJR47TF BOGJ Brassica oleracea genomic clone BOGJR47, DNA sequence.    50   0.057  1
AW076871|AW076871.1 fj03a01.y1 Zebrafish adult olfactory Danio rerio cDNA 5', mRNA sequence.    50   0.057  1
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    40   0.060  9
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    36   0.11   9
dna update 2004. 1.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 1,214,016,397
protein update 2009. 5.14
PSORT 

 psg: 0.73  gvh: 0.56  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal

>> prediction for CFH239 is mit
5' end seq. ID CFH239F
5' end seq. 
>CFH239F.Seq
ATTAAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTNATTAATTTTTTAAT
GGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTC
TTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCAC
TACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACT
TGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGG
TAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAG
AATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCG
TTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCT
CCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGT
ATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTT----
------
Length of 5' end seq. 596
3' end seq. ID CFH239Z
3' end seq. 
>CFH239Z.Seq
----------GCTCAACAAGGTTNTCAAGCATGGAAANAAGGNGTCAATNANATTGGTGA
TGANATCGCCAANNCTGCNCATNATGTAGGTGATGGTTTNNCCNANACTGCNCGTTAAGT
AGGTNATGGAATTANAATCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNA
ANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACA
AANAATGGCTNAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAANACG
ATTGCAAANAAACANANAAANACNANAGCCNATTNNAACTTA
Length of 3' end seq. 332
Connected seq. ID CFH239P
Connected seq. 
>CFH239P.Seq
ATTAAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTNATTAATTTTTTAAT
GGCAAAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTC
TTTTGGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCAC
TACTCATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACT
TGAATGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGG
TAATGAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAG
AATTGCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCG
TTTCCCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCT
CCTTCACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGT
ATGATACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTT----
------GCTCAACAAGGTTNTCAAGCATGGAAANAAGGNGTCAATNANATTGGTGATGAN
ATCGCCAANNCTGCNCATNATGTAGGTGATGGTTTNNCCNANACTGCNCGTTAAGTAGGT
NATGGAATTANAATCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGAGCTNAANAA
ACTTGGGTNAANAAATATTAAAGGTTATCCTTNATTNAAATTNAAAAAGCCCNACAAANA
ATGGCTNAACAANAANAAANAANAAGGTTTATGCAANAANAAAGTNAAANAANACGATTG
CAAANAAACANANAAANACNANAGCCNATTNNAACTTA
Length of connected seq. 928
Full length Seq ID -
Full length Seq. -
Length of full length seq. -