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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH234
Library CF
(Link to library)
Clone ID CFH234
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFH234P
(Link to Original site)
Representative DNA sequence 
>CFH234 (CFH234Q) /CSM/CF/CFH2-B/CFH234Q.Seq.d/
AATATTTTTTTTATCTTNTTATATACAATTTAATTTNTTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGC
TTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATAT
CAATGCTCCATCTTTTAATATTGAAAAAGXXXXXXXXXXAAGTAGGTNATGGAATTANAA
TCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGANCTNAAAAAACTTGGGTNAAAA
AATATTAAAGGTTATCCTTAATTTAAATTNAAAAAGCCCNACAAANAATGGCTGAACNAN
AANAAAAAANAAGGTTTATGCNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifflsxyiqfnxlif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipllii
fghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeielli
tvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTA
YPDENGLGWDILASFYNMDINAPSFNIEK---

---VGXGIXIPAKEGYXLXKXGXXKTWVKKY*rlsli*ixkaxqxmaexxxkxrfmx
Translated Amino Acid sequence (All Frames) 
Frame A:
niffixlyti*fxnflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptthn
fwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdriad
hsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv*yc
lsr*kwfgmgypcifl*ygyqcsif*y*k---

---k*vmelxslqrrdxnslxmxlkklgxknikgyp*fkxkkpxkxwlnxxkkxglc

Frame B:
ifflsxyiqfnxlif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipllii
fghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeielli
tvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTA
YPDENGLGWDILASFYNMDINAPSFNIEK---

---srxwnxnpckggixtx*xwxxknlgxkilkvilnlnxksptxng*txxkxkvya

Frame C:
yffylxiynlix*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*f
lgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*s
q*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsmill
iqmkmvwdgislhlfiiwismlhllilkk---

---VGXGIXIPAKEGYXLXKXGXXKTWVKKY*rlsli*ixkaxqxmaexxxkxrfmx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH234 (CFH234Q) /CSM/CF/CFH2-B/CFH234Q.Seq.d/                       1287   0.0
SHJ287 (SHJ287Q) /CSM/SH/SHJ2-D/SHJ287Q.Seq.d/                       1154   0.0
SFL412 (SFL412Q) /CSM/SF/SFL4-A/SFL412Q.Seq.d/                       1154   0.0
SFK728 (SFK728Q) /CSM/SF/SFK7-B/SFK728Q.Seq.d/                       1154   0.0
SFK165 (SFK165Q) /CSM/SF/SFK1-C/SFK165Q.Seq.d/                       1154   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1154   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1154   0.0
SFJ104 (SFJ104Q) /CSM/SF/SFJ1-A/SFJ104Q.Seq.d/                       1154   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1154   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1154   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   0.001  13
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   0.023  9
BH689643|BH689643.1 BOMDR69TF BO_2_3_KB Brassica oleracea genomic clone BOMDR69, DNA sequence.    50   0.049  1
BH530565|BH530565.1 BOGJR47TF BOGJ Brassica oleracea genomic clone BOGJR47, DNA sequence.    50   0.049  1
AW076871|AW076871.1 fj03a01.y1 Zebrafish adult olfactory Danio rerio cDNA 5', mRNA sequence.    50   0.049  1
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   0.049  8
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   0.062  12
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   0.21   11
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    32   0.68   13
AC021820|AC021820.7 Homo sapiens chromosome , clone RP11-40H19, complete sequence.    46   0.76   1
dna update 2004. 1.31
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 1,235,136,892
protein update 2009. 5.14
PSORT 

 psg: 0.73  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CFH234 is nuc
5' end seq. ID CFH234F
5' end seq. 
>CFH234F.Seq
AATATTTTTTTTATCTTNTTATATACAATTTAATTTNTTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGC
TTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATAT
CAATGCTCCATCTTTTAATATTGAAAAAG----------
Length of 5' end seq. 629
3' end seq. ID CFH234Z
3' end seq. 
>CFH234Z.Seq
----------AAGTAGGTNATGGAATTANAATCCCTGCAAAGGAGGGATATNAACTCNTT
AAANATGGANCTNAAAAAACTTGGGTNAAAAAATATTAAAGGTTATCCTTAATTTAAATT
NAAAAAGCCCNACAAANAATGGCTGAACNANAANAAAAAANAAGGTTTATGCNA
Length of 3' end seq. 164
Connected seq. ID CFH234P
Connected seq. 
>CFH234P.Seq
AATATTTTTTTTATCTTNTTATATACAATTTAATTTNTTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGC
TTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATAT
CAATGCTCCATCTTTTAATATTGAAAAAG----------AAGTAGGTNATGGAATTANAA
TCCCTGCAAAGGAGGGATATNAACTCNTTAAANATGGANCTNAAAAAACTTGGGTNAAAA
AATATTAAAGGTTATCCTTAATTTAAATTNAAAAAGCCCNACAAANAATGGCTGAACNAN
AANAAAAAANAAGGTTTATGCNA
Length of connected seq. 793
Full length Seq ID -
Full length Seq. -
Length of full length seq. -