CFH223
Library CF
(Link to library)
Clone ID CFH223
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFH223P
(Link to Original site)
Representative DNA sequence
>CFH223 (CFH223Q) /CSM/CF/CFH2-A/CFH223Q.Seq.d/
AAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTATTAATTTTTTAATGGCA
AAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTT
GGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACT
CATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAA
TGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAAT
GAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATT
GCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTC
CCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTT
CACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGA
TACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTTXXXXXXXXX
XAATGATCAATTAAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCG
CTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTT
CCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCA
GAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTG
GCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAA
GAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTG
TCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCA
ATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCA
TTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAA
TTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAG
AAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATA
CAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAG
GTGCAAGAAATTAAAAAAAGAAAAAATAAAANT
sequence update 2001. 6. 1
Translated Amino Acid sequence
nnyffylhyiqfnllif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipll
iifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiel
litvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYD
TAYPDENGLGWDILAS---

---NDQLNCYRCWYCRWCYRCRRWCSSSRCSSRC*gwcrrscfqswwlyfsyc*scw*ly
t*qsyslc*srlqfhekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrlssme
rrcq*dw**yrqyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilkvil
n*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtw*lct
*krckklkkekik


Translated Amino Acid sequence (All Frames)
Frame A:
k*lfflsslyti*finflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptt
hnfwacnsvinqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdri
adhsrrnhvdndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv*
yclsr*kwfgmgypcif---

---NDQLNCYRCWYCRWCYRCRRWCSSSRCSSRC*gwcrrscfqswwlyfsyc*scw*ly
t*qsyslc*srlqfhekwctkswqrrt*lc**rlqfrerwctkswqrrt*lcstrlssme
rrcq*dw**yrqyct*cr*wfrqyct*sr*wn*nhcrggi*th*rws*rnlgeeilkvil
n*n*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrsstiytqtw*lct
*krckklkkekik

Frame B:
nnyffylhyiqfnllif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipll
iifghvivsltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiel
litvdetmlimislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYD
TAYPDENGLGWDILAS---

---min*iaidvgiaggaivagagaaaagaaagaeggaagvasraggyisrtasrvgnsi
rsratryanqgynsmrngaqragngarnyanegynsvrdgaqragngarnyaqqgyqawr
egvneigddiantahdvgdgfantarevgdgiritaeegyelikdgaeetwvkky*rlsl
ikikkaqqrmaeqeerrrlmqeeserrrlqrnrerqepirtyttaqeaqryipkpgnfar
krgarn*kkkk*x

Frame C:
iiiffifiiynliy*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys
*flgm**ch*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc
*sq*tkpc***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsmi
lliqmkmvwdgislhl---

---*sikll*mlvlqvvlslqalvqqqpvqqpvlrvvpqellpelvviflvllvvlvtly
vaellvmlikvtip*emvhkelatahvimlmkvtip*emvhkelatahvimlnkvikhge
kvsmrlvmispilhmm*vmvspilhvk*vmeleslqrrdmnslkmelkklg*rnikgyp*
lklkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleliqlhkklndiypnlvtlhv
kevqeikkrknkx

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFH223 (CFH223Q) /CSM/CF/CFH2-A/CFH223Q.Seq.d/ 2226 0.0
CFI231 (CFI231Q) /CSM/CF/CFI2-B/CFI231Q.Seq.d/ 1138 0.0
CFA848 (CFA848Q) /CSM/CF/CFA8-B/CFA848Q.Seq.d/ 1126 0.0
AFE266 (AFE266Q) /CSM/AF/AFE2-C/AFE266Q.Seq.d/ 1126 0.0
SFL412 (SFL412Q) /CSM/SF/SFL4-A/SFL412Q.Seq.d/ 1124 0.0
SFK831 (SFK831Q) /CSM/SF/SFK8-B/SFK831Q.Seq.d/ 1124 0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/ 1124 0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/ 1124 0.0
SFJ191 (SFJ191Q) /CSM/SF/SFJ1-D/SFJ191Q.Seq.d/ 1124 0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/ 1124 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 165 2e-36 1
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 80 9e-31 12
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 80 5e-29 8
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 5e-04 13
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 36 0.002 13
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 34 0.003 13
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 0.005 14
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 42 0.009 9
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 40 0.009 12
AZ930073|AZ930073.1 479.dil58d12.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dil58d12.s1, DNA sequence. 40 0.009 2
dna update 2004. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso... 61 1e-07
AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo... 51 1e-04
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16... 49 5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c... 49 5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup... 49 5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele... 47 0.002
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 46 0.003
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo... 44 0.010
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR... 42 0.037
protein update 2009. 5.14
PSORT

psg: 0.73 gvh: 0.40 alm: 0.61 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: mitochondrial
24.0 %: cytoplasmic
24.0 %: nuclear
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for CFH223 is mit

5' end seq. ID CFH223F
5' end seq.
>CFH223F.Seq
AAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTATTAATTTTTTAATGGCA
AAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTT
GGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACT
CATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAA
TGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAAT
GAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATT
GCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTC
CCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTT
CACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGA
TACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTT---------
-
Length of 5' end seq. 591
3' end seq. ID CFH223Z
3' end seq.
>CFH223Z.Seq
----------AATGATCAATTAAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCG
TTGCAGGCGCTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAG
GAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTA
TACGTAGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCAC
AAAGAGCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATG
GTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGA
GAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATG
GTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGAT
ATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCT
TAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGA
TGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTA
GAACTTATACAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCAC
GTAAAAGAGGTGCAAGAAATTAAAAAAAGAAAAAATAAAANT
Length of 3' end seq. 752
Connected seq. ID CFH223P
Connected seq.
>CFH223P.Seq
AAATAATTATTTTTTTTATCTTCATTATATACAATTTAATTTATTAATTTTTTAATGGCA
AAACTAAAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTT
GGATACGAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACT
CATAATTTTTGGGCATGTAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAA
TGCAATAATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAAT
GAATACATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATT
GCTGATCACAGTAGACGAAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTC
CCAGCATTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTT
CACCAATTCAAAACTCAATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGA
TACTGCTTATCCAGATGAAAATGGTTTGGGATGGGATATCCTTGCATCTTT---------
-AATGATCAATTAAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCG
CTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTT
CCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCA
GAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTG
GCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAA
GAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTG
TCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCA
ATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCA
TTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAA
TTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAG
AAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATA
CAACTGCACAAGAAGCTCAACGATATATACCCAAACCTGGTAACTTTGCACGTAAAAGAG
GTGCAAGAAATTAAAAAAAGAAAAAATAAAANT
Length of connected seq. 1343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -