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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH205
Library CF
(Link to library)
Clone ID CFH205
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03274-1
Original site URL
Representative seq. ID CFH205P
(Link to Original site)
Representative DNA sequence 
>CFH205 (CFH205Q) /CSM/CF/CFH2-A/CFH205Q.Seq.d/
ATTTTTATAATTTAAAAAATATATATATATAAATTAATAATGACAACACCAATTAGTTTA
AGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATTTGGATATTTGT
AGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATGGTGAATCAATA
TTTGTAGGACAAACTGAAAAAATTAACAATAATTTAAATCCAGAATTTAAAAAATCAGTT
ATTATTGATTATCATTTTGAAAATATTCAAAATCTTAGTTTTATTGTTGTTGATATTGAT
AAAGAAATTAAAAGAGTTGGTGATTTAGAAGGTAATGATATTATTGGTCAATATACAACA
ACATTAGGTAATATTATATCAAAACCAAATAAAAAAGTTATTAGCGAAATTAAACATAAA
GGTAAAGAAACAGGTGTTATTGAGATAACAGCAGAAGAAATTCGTGAAACTGGTCATAAC
TTTTTATTTAAAATTAATGGTACAAAATTGGATAAAAAAGATTTATTTACAAGTGACCCA
TATTTTAAGATTTAXXXXXXXXXXTTGATTGTACTGCAAGTAATGGTTCACCATCAACTT
CAACTTCATTACATTATCACACACCAAGCCATCCAAGCCAATATGCAAAATCAATCTTTT
CAGTTGGTTCAGTATTGGCACCATATGATTCTGATGGAAATATTGAGGTGTTGGGTTTTG
GTGGTATTCATAGGGGTAGTACAAGTCATTGTTTCCAATTTGGTTCAAAAAAAGAAGTAC
GTGGTGTTGAGGGTGTTTTATTAACTTATGGTGAAGTTATACCATCAATGTCATTATCTT
ATCCAACCAATTTCAAAGATATCATTTCTTACGCTGCAAAGAAATCATTGGATGGTGTTA
CTTCAAAATCTCAAAAATATACTATACTCTTAATTTTAACCGATGGTGAAATCTCTGATA
TGAATGAAACAGTTCATGAAATTGTTAAGGCTTCAAAACAATCACCTCTCTCTATAGTTA
TCATTGGTATTGGTGAAGCTACATTCGATAATATGAATAGATTGGATGGTGATGATGGTA
ATTCTTTAACTGATTCTTCAGGTCAAACTGCAACTCGTGATATCGTTCAATTCGTACCAT
TCAATAATTTCTCTGCAAATCCTGAAGCTTTAGCCACTGAAACACTTCGTGAAATACCTC
AACAATTACTTGGTTTTANAACCAAAATAATATTTACCAANAGTCATAGATAAAATAAAA
TAAATTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifii*KIYIYKLIMTTPISLSKPRVELRFKCSHLKNLDICSKSDPLIMVFDKRGEHGESI
FVGQTEKINNNLNPEFKKSVIIDYHFENIQNLSFIVVDIDKEIKRVGDLEGNDIIGQYTT
TLGNIISKPNKKVISEIKHKGKETGVIEITAEEIRETGHNFLFKINGTKLDKKDLFTSDP
YFKI---

---DCTASNGSPSTSTSLHYHTPSHPSQYAKSIFSVGSVLAPYDSDGNIEVLGFGGIHRG
STSHCFQFGSKKEVRGVEGVLLTYGEVIPSMSLSYPTNFKDIISYAAKKSLDGVTSKSQK
YTILLILTDGEISDMNETVHEIVKASKQSPLSIVIIGIGEATFDNMNRLDGDDGNSLTDS
SGQTATRDIVQFVPFNNFSANPEALATETLREIPQQLLGFXTKIIFTXSHR*nkinl
Translated Amino Acid sequence (All Frames) 
Frame A:
ifii*KIYIYKLIMTTPISLSKPRVELRFKCSHLKNLDICSKSDPLIMVFDKRGEHGESI
FVGQTEKINNNLNPEFKKSVIIDYHFENIQNLSFIVVDIDKEIKRVGDLEGNDIIGQYTT
TLGNIISKPNKKVISEIKHKGKETGVIEITAEEIRETGHNFLFKINGTKLDKKDLFTSDP
YFKI---

---livlqvmvhhqlqlhyiithqaiqanmqnqsfqlvqywhhmilmeilrcwvlvvfig
vvqvivsnlvqkkkyvvlrvfy*lmvklyhqchyliqpiskisfltlqrnhwmvllqnlk
nilys*f*pmvksli*mkqfmkllrlqnnhlsl*lslvlvklhsii*idwmvmmvil*li
lqvklqlvisfnsyhsiislqilkl*plkhfvkylnnylvlxpk*ylpxvidkik*i

Frame B:
fl*fkkyiyin***qhqlv*vnpe*n*dlnvhi*riwifvvnqih*lwfltkevnmvnqy
l*dklkkltii*iqnlknqllliiilkifkilvllllilikklkelvi*kvmillvniqq
h*vilyqnqikkllaklnikvkkqvllr*qqkkfvklvitfylklmvqnwikkiylqvth
ilrf---

---*lyck*wftinfnfitlshtkpskpickinlfswfsigti*f*wky*gvgfwwys*g
*ykslfpiwfkkrstwc*gcfinlw*sytinviilsnqfqryhflrckeiigwcyfkisk
iyytlnfnrw*nl*ye*nss*nc*gfktitslysyhwyw*syir*ye*igw**w*ffn*f
frsncns*yrsirtiq*flcks*sfsh*nts*ntstitwfxnqnniyqxs*ik*nkf

Frame C:
fynlkniyi*inndntn*fk*tqsriei*mftfkefgyl**irsidygf*qkr*tw*ini
crtn*kn*q*fksri*kisyy*lsf*kysks*fycc*y**rn*ksw*frr**yywsiynn
ir*yyiktk*ksy*rn*t*r*rnrcy*dnsrrns*nws*lfi*n*wykig*krfiyk*pi
f*dl---

---DCTASNGSPSTSTSLHYHTPSHPSQYAKSIFSVGSVLAPYDSDGNIEVLGFGGIHRG
STSHCFQFGSKKEVRGVEGVLLTYGEVIPSMSLSYPTNFKDIISYAAKKSLDGVTSKSQK
YTILLILTDGEISDMNETVHEIVKASKQSPLSIVIIGIGEATFDNMNRLDGDDGNSLTDS
SGQTATRDIVQFVPFNNFSANPEALATETLREIPQQLLGFXTKIIFTXSHR*nkinl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH205 (CFH205Q) /CSM/CF/CFH2-A/CFH205Q.Seq.d/                       2339   0.0
SSA705 (SSA705Q) /CSM/SS/SSA7-A/SSA705Q.Seq.d/                        930   0.0
SLG357 (SLG357Q) /CSM/SL/SLG3-C/SLG357Q.Seq.d/                        839   0.0
VFK812 (VFK812Q) /CSM/VF/VFK8-A/VFK812Q.Seq.d/                         68   4e-10
SLI395 (SLI395Q) /CSM/SL/SLI3-D/SLI395Q.Seq.d/                         46   0.001
FC-BE16 (FC-BE16Q) /CSM/FC/FC-BE/FC-BE16Q.Seq.d/                       44   0.005
VHP434 (VHP434Q) /CSM/VH/VHP4-B/VHP434Q.Seq.d/                         38   0.32
VFA828 (VFA828Q) /CSM/VF/VFA8-B/VFA828Q.Seq.d/                         38   0.32
SSJ792 (SSJ792Q) /CSM/SS/SSJ7-D/SSJ792Q.Seq.d/                         38   0.32
SSJ541 (SSJ541Q) /CSM/SS/SSJ5-B/SSJ541Q.Seq.d/                         38   0.32
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   882   0.0    18
AY332759|AY332759.1 Dictyostelium discoideum copine a (cpna) mRNA, complete cds.    56   1e-20  5
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   3e-12  23
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.             42   1e-09  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   3e-09  21
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   1e-08  22
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   3e-08  21
AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.    32   7e-08  14
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   8e-08  25
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         32   1e-07  20
dna update 2004. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC050240_1(BC050240|pid:none) Danio rerio copine I, mRNA (cDNA c...   160   1e-46
BX927411_3(BX927411|pid:none) Zebrafish DNA sequence from clone ...   160   7e-46
BC151889_1(BC151889|pid:none) Danio rerio copine I, mRNA (cDNA c...   158   3e-44
(Q7YXU4) RecName: Full=Copine-A;  &AY332759_1(AY332759|pid:none)      181   6e-44
BC096510_1(BC096510|pid:none) Xenopus tropicalis hypothetical pr...   159   8e-44
AK220348_1(AK220348|pid:none) Mus musculus mRNA for mKIAA0636 pr...   157   4e-43
(Q8BT60) RecName: Full=Copine-3; AltName: Full=Copine III;  &AL6...   157   4e-43
BC061671_1(BC061671|pid:none) Xenopus laevis copine III, mRNA (c...   155   9e-43
BC142290_1(BC142290|pid:none) Bos taurus copine III, mRNA (cDNA ...   157   1e-42
AK292912_1(AK292912|pid:none) Homo sapiens cDNA FLJ77305 complet...   154   9e-42
protein update 2009. 5.14
PSORT 

 psg: 0.91  gvh: 0.48  alm: 0.41  top: 0.63  tms: 0.00  mit: 0.40  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: mitochondrial
	 32.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CFH205 is mit
5' end seq. ID CFH205F
5' end seq. 
>CFH205F.Seq
ATTTTTATAATTTAAAAAATATATATATATAAATTAATAATGACAACACCAATTAGTTTA
AGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATTTGGATATTTGT
AGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATGGTGAATCAATA
TTTGTAGGACAAACTGAAAAAATTAACAATAATTTAAATCCAGAATTTAAAAAATCAGTT
ATTATTGATTATCATTTTGAAAATATTCAAAATCTTAGTTTTATTGTTGTTGATATTGAT
AAAGAAATTAAAAGAGTTGGTGATTTAGAAGGTAATGATATTATTGGTCAATATACAACA
ACATTAGGTAATATTATATCAAAACCAAATAAAAAAGTTATTAGCGAAATTAAACATAAA
GGTAAAGAAACAGGTGTTATTGAGATAACAGCAGAAGAAATTCGTGAAACTGGTCATAAC
TTTTTATTTAAAATTAATGGTACAAAATTGGATAAAAAAGATTTATTTACAAGTGACCCA
TATTTTAAGATTTA----------
Length of 5' end seq. 554
3' end seq. ID CFH205Z
3' end seq. 
>CFH205Z.Seq
----------TTGATTGTACTGCAAGTAATGGTTCACCATCAACTTCAACTTCATTACAT
TATCACACACCAAGCCATCCAAGCCAATATGCAAAATCAATCTTTTCAGTTGGTTCAGTA
TTGGCACCATATGATTCTGATGGAAATATTGAGGTGTTGGGTTTTGGTGGTATTCATAGG
GGTAGTACAAGTCATTGTTTCCAATTTGGTTCAAAAAAAGAAGTACGTGGTGTTGAGGGT
GTTTTATTAACTTATGGTGAAGTTATACCATCAATGTCATTATCTTATCCAACCAATTTC
AAAGATATCATTTCTTACGCTGCAAAGAAATCATTGGATGGTGTTACTTCAAAATCTCAA
AAATATACTATACTCTTAATTTTAACCGATGGTGAAATCTCTGATATGAATGAAACAGTT
CATGAAATTGTTAAGGCTTCAAAACAATCACCTCTCTCTATAGTTATCATTGGTATTGGT
GAAGCTACATTCGATAATATGAATAGATTGGATGGTGATGATGGTAATTCTTTAACTGAT
TCTTCAGGTCAAACTGCAACTCGTGATATCGTTCAATTCGTACCATTCAATAATTTCTCT
GCAAATCCTGAAGCTTTAGCCACTGAAACACTTCGTGAAATACCTCAACAATTACTTGGT
TTTANAACCAAAATAATATTTACCAANAGTCATAGATAAAATAAAATAAATTTG
Length of 3' end seq. 704
Connected seq. ID CFH205P
Connected seq. 
>CFH205P.Seq
ATTTTTATAATTTAAAAAATATATATATATAAATTAATAATGACAACACCAATTAGTTTA
AGTAAACCCAGAGTAGAATTGAGATTTAAATGTTCACATTTAAAGAATTTGGATATTTGT
AGTAAATCAGATCCATTGATTATGGTTTTTGACAAAAGAGGTGAACATGGTGAATCAATA
TTTGTAGGACAAACTGAAAAAATTAACAATAATTTAAATCCAGAATTTAAAAAATCAGTT
ATTATTGATTATCATTTTGAAAATATTCAAAATCTTAGTTTTATTGTTGTTGATATTGAT
AAAGAAATTAAAAGAGTTGGTGATTTAGAAGGTAATGATATTATTGGTCAATATACAACA
ACATTAGGTAATATTATATCAAAACCAAATAAAAAAGTTATTAGCGAAATTAAACATAAA
GGTAAAGAAACAGGTGTTATTGAGATAACAGCAGAAGAAATTCGTGAAACTGGTCATAAC
TTTTTATTTAAAATTAATGGTACAAAATTGGATAAAAAAGATTTATTTACAAGTGACCCA
TATTTTAAGATTTA----------TTGATTGTACTGCAAGTAATGGTTCACCATCAACTT
CAACTTCATTACATTATCACACACCAAGCCATCCAAGCCAATATGCAAAATCAATCTTTT
CAGTTGGTTCAGTATTGGCACCATATGATTCTGATGGAAATATTGAGGTGTTGGGTTTTG
GTGGTATTCATAGGGGTAGTACAAGTCATTGTTTCCAATTTGGTTCAAAAAAAGAAGTAC
GTGGTGTTGAGGGTGTTTTATTAACTTATGGTGAAGTTATACCATCAATGTCATTATCTT
ATCCAACCAATTTCAAAGATATCATTTCTTACGCTGCAAAGAAATCATTGGATGGTGTTA
CTTCAAAATCTCAAAAATATACTATACTCTTAATTTTAACCGATGGTGAAATCTCTGATA
TGAATGAAACAGTTCATGAAATTGTTAAGGCTTCAAAACAATCACCTCTCTCTATAGTTA
TCATTGGTATTGGTGAAGCTACATTCGATAATATGAATAGATTGGATGGTGATGATGGTA
ATTCTTTAACTGATTCTTCAGGTCAAACTGCAACTCGTGATATCGTTCAATTCGTACCAT
TCAATAATTTCTCTGCAAATCCTGAAGCTTTAGCCACTGAAACACTTCGTGAAATACCTC
AACAATTACTTGGTTTTANAACCAAAATAATATTTACCAANAGTCATAGATAAAATAAAA
TAAATTTG
Length of connected seq. 1258
Full length Seq ID -
Full length Seq. -
Length of full length seq. -