NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH171
Library CF
(Link to library)
Clone ID CFH171
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13845-1
Original site URL
Representative seq. ID CFH171P
(Link to Original site)
Representative DNA sequence 
>CFH171 (CFH171Q) /CSM/CF/CFH1-C/CFH171Q.Seq.d/
ACACATTTTACACGCACGCACAATACGTTNGAATATATAATTATATTAATATACGATAAA
AAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAAAAAAAAAAXXXXXXX
XXXCTNCAACAGCAAANCCNNCCAAATAATAATAATAATAATAATGATGATGAGGATGAA
GATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATAATATAATTGAAGAA
GAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTACAACAGCTAACAAC
AATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATATTTTACGTACTCGT
ACATATGATATTTCAATCACTTATGATAAATATTATCAAACNCCAAGAGTTTGGTTATTT
GGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTGAAGATATTTCAGAA
GATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAGGTATNTCATTTGCA
TACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTGATAGACAATCCGAA
AATGGTAAAGAACCAAGAGTTGACCAATATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hilhartirxni*ly*YTIKKHYTANANYCIFQIKKK---

---LQQQXXPNNNNNNNDDEDEDEDGDIPDLDDFQDDNIIEEEDPAVLSKNNKTTTTTTA
NNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRVWLFGYDENRKPLKPEEIFEDI
SEDHAHKTVTIDSHPHLGXSFAYIHPCRHAAVMKKLVDRQSENGKEPRVDQY
Translated Amino Acid sequence (All Frames) 
Frame A:
thftrthntxeyiiiliydkktlyskrkllylsn*kk---

---LQQQXXPNNNNNNNDDEDEDEDGDIPDLDDFQDDNIIEEEDPAVLSKNNKTTTTTTA
NNNNNNNSENKVEDNDNILRTRTYDISITYDKYYQTPRVWLFGYDENRKPLKPEEIFEDI
SEDHAHKTVTIDSHPHLGXSFAYIHPCRHAAVMKKLVDRQSENGKEPRVDQY

Frame B:
hilhartirxni*ly*YTIKKHYTANANYCIFQIKKK---

---xnskxxqiiiiiimmmrmkmkmvifqi*miskmii*lkkriqlyyqkiikqqllqql
ttiiiiiqkiklkimiifyvlvhmifqslminiikxqefgyldmmkienh*nqkkslkif
qkimhiklsqsiathi*vxhlhtfihvdmlps*knwlidnpkmvknqeltni

Frame C:
tfythaqyvxiynyinir*kniiqqtqiivsfklkkk---

---xtaxpxk*********g*r*rw*ysrfr*fpr**yn*rrgssciikk**nnnyyns*
qq****frk*s*r***yftysyi*yfnhl**ilsnxkslviwi**k*ktietrrnl*ryf
rrsct*nchnr*pptfryxicihssm*tccrhekig**tirkw*rtks*pif
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLB748 (SLB748Q) /CSM/SL/SLB7-B/SLB748Q.Seq.d/                        617   e-176
CFH171 (CFH171Q) /CSM/CF/CFH1-C/CFH171Q.Seq.d/                        617   e-176
AFM817 (AFM817Q) /CSM/AF/AFM8-A/AFM817Q.Seq.d/                        617   e-176
VFI445 (VFI445Q) /CSM/VF/VFI4-B/VFI445Q.Seq.d/                        605   e-172
CFB657 (CFB657Q) /CSM/CF/CFB6-C/CFB657Q.Seq.d/                        605   e-172
AFL613 (AFL613Q) /CSM/AF/AFL6-A/AFL613Q.Seq.d/                        605   e-172
CFI566 (CFI566Q) /CSM/CF/CFI5-C/CFI566Q.Seq.d/                        599   e-170
AFE201 (AFE201Q) /CSM/AF/AFE2-A/AFE201Q.Seq.d/                        593   e-168
SFH850 (SFH850Q) /CSM/SF/SFH8-C/SFH850Q.Seq.d/                        589   e-167
AFM210 (AFM210Q) /CSM/AF/AFM2-A/AFM210Q.Seq.d/                        587   e-167
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.   617   0.0    8
BU582697|BU582697.1 rc67g08.y2 Meloidogyne hapla egg SL1 TOPO v1 Meloidogyne hapla cDNA similar to WP:CE25486 Y55F3AM.4 ;, mRNA sequence.    60   6e-10  2
CK242486|CK242486.1 rx10g04.y1 Meloidogyne paranaensis egg SMART pGEM Meloidogyne paranaensis cDNA 5' similar to TR:Q9VVS6 Q9VVS6 CG6877 PROTEIN. ;, mRNA sequence.    68   2e-07  1
BE608405|BE608405.1 sq30e12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-6983 5' similar to TR:O43035 O43035 HYPOTHETICAL 31.9 KD PROTEIN. ;, mRNA sequence.    48   4e-07  3
BG041867|BG041867.1 saa42b08.y1 Gm-c1059 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1059-1600 5' similar to TR:Q9VVS6 Q9VVS6 CG6877 PROTEIN. ;, mRNA sequence.    48   4e-07  3
BQ612216|BQ612216.1 sap80h04.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-7255 5' similar to TR:Q9VVS6 Q9VVS6 CG6877 PROTEIN. ;, mRNA sequence.    48   5e-07  3
CA799373|CA799373.1 sat32h02.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-3411 5' similar to TR:Q9VVS6 Q9VVS6 CG6877 PROTEIN. ;, mRNA sequence.    48   6e-07  3
BI969174|BI969174.1 GM830007B10F05 Gm-r1083 Glycine max cDNA clone Gm-r1083-2577 3', mRNA sequence.    48   9e-07  3
BM891034|BM891034.1 sam22a12.y1 Gm-c1068 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1068-5400 5' similar to TR:Q9VVS6 Q9VVS6 CG6877 PROTEIN. ;, mRNA sequence.    48   2e-05  3
BX752597|BX752597.1 Xenopus tropicalis EST, clone TGas080n04 3'.    58   2e-04  1
dna update 2004. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU972874_1(EU972874|pid:none) Zea mays clone 389483 autophagy-re...   144   2e-33
BT052164_1(BT052164|pid:none) Medicago truncatula clone MTYF9_FA...   144   2e-33
AY350711_16(AY350711|pid:none) Sisymbrium irio clone BAC Sio11E1...   143   3e-33
(Q0WWQ1) RecName: Full=Autophagy-related protein 3; AltName: Ful...   143   4e-33
FJ747649_1(FJ747649|pid:none) Triticum aestivum ATG3 protein (AT...   142   1e-32
FJ416327_1(FJ416327|pid:none) Bombyx mori autophagy related prot...   132   8e-30
BT078542_1(BT078542|pid:none) Lepeophtheirus salmonis clone lsal...   131   1e-29
AM910989_29(AM910989|pid:none) Plasmodium knowlesi strain H chro...   130   3e-29
(Q6GQE7) RecName: Full=Autophagy-related protein 3; AltName: Ful...   129   5e-29
(Q0VCL3) RecName: Full=Autophagy-related protein 3;  &BC120110_1...   129   7e-29
protein update 2009. 5.14
PSORT 

 psg: 0.79  gvh: 0.13  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for CFH171 is nuc
5' end seq. ID CFH171F
5' end seq. 
>CFH171F.Seq
ACACATTTTACACGCACGCACAATACGTTNGAATATATAATTATATTAATATACGATAAA
AAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAAAAAAAAAA-------
---
Length of 5' end seq. 113
3' end seq. ID CFH171Z
3' end seq. 
>CFH171Z.Seq
----------CTNCAACAGCAAANCCNNCCAAATAATAATAATAATAATAATGATGATGA
GGATGAAGATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATAATATAAT
TGAAGAAGAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTACAACAGC
TAACAACAATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATATTTTACG
TACTCGTACATATGATATTTCAATCACTTATGATAAATATTATCAAACNCCAAGAGTTTG
GTTATTTGGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTGAAGATAT
TTCAGAAGATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAGGTATNTC
ATTTGCATACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTGATAGACA
ATCCGAAAATGGTAAAGAACCAAGAGTTGACCAATATTT
Length of 3' end seq. 509
Connected seq. ID CFH171P
Connected seq. 
>CFH171P.Seq
ACACATTTTACACGCACGCACAATACGTTNGAATATATAATTATATTAATATACGATAAA
AAAACATTATACAGCAAACGCAAATTATTGTATCTTTCAAATTAAAAAAAAAA-------
---CTNCAACAGCAAANCCNNCCAAATAATAATAATAATAATAATGATGATGAGGATGAA
GATGAAGATGGTGATATTCCAGATTTAGATGATTTCCAAGATGATAATATAATTGAAGAA
GAGGATCCAGCTGTATTATCAAAAAATAATAAAACAACAACTACTACAACAGCTAACAAC
AATAATAATAATAATTCAGAAAATAAAGTTGAAGATAATGATAATATTTTACGTACTCGT
ACATATGATATTTCAATCACTTATGATAAATATTATCAAACNCCAAGAGTTTGGTTATTT
GGATATGATGAAAATAGAAAACCATTGAAACCAGAAGAAATCTTTGAAGATATTTCAGAA
GATCATGCACATAAAACTGTCACAATCGATAGCCACCCACATTTAGGTATNTCATTTGCA
TACATTCATCCATGTAGACATGCTGCCGTCATGAAAAAATTGGTTGATAGACAATCCGAA
AATGGTAAAGAACCAAGAGTTGACCAATATTT
Length of connected seq. 622
Full length Seq ID -
Full length Seq. -
Length of full length seq. -