>CFH143 (CFH143Q) /CSM/CF/CFH1-B/CFH143Q.Seq.d/
ATTTTTNTATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTNAGA
ATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCT
GGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGT
AAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATT
AAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGA
GCAGTATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGC
AGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACA
AGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGG
CGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGATXXXXXXXXXX

ifxfiynitphn**NVIQXRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC
KAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATRS*schiis
rftkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmg---

Frame A:
ifxfiynitphn**NVIQXRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAIC
KAKRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATRS*schiis
rftkgstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmg---


Frame B:
fxylyiilhpitnkmsfnxelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfv
klkeehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpevrvatlla
glpkevpcytvnrqcssglqaiancaaavkagfydiglaggvesmslnpmaw---


Frame C:
fxiyi*yytp*likchsixn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*
s*krsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnpklelphy*q
vyqrkyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhg---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH143 (CFH143Q) /CSM/CF/CFH1-B/CFH143Q.Seq.d/                       1019   0.0
AFL689 (AFL689Q) /CSM/AF/AFL6-D/AFL689Q.Seq.d/                       1005   0.0
CFI332 (CFI332Q) /CSM/CF/CFI3-B/CFI332Q.Seq.d/                       1003   0.0
SFL240 (SFL240Q) /CSM/SF/SFL2-B/SFL240Q.Seq.d/                       1001   0.0
CFB164 (CFB164Q) /CSM/CF/CFB1-C/CFB164Q.Seq.d/                        997   0.0
AFH274 (AFH274Q) /CSM/AF/AFH2-D/AFH274Q.Seq.d/                        997   0.0
AFE219 (AFE219Q) /CSM/AF/AFE2-A/AFE219Q.Seq.d/                        997   0.0
VFG270 (VFG270Q) /CSM/VF/VFG2-C/VFG270Q.Seq.d/                        989   0.0
SFD851 (SFD851Q) /CSM/SF/SFD8-C/SFD851Q.Seq.d/                        989   0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/                        989   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   412   0.0    7
CD833359|CD833359.1 BN40.066O19F011227 BN40 Brassica napus cDNA clone BN40066O19, mRNA sequence.    44   0.044  2
CD816410|CD816410.1 BN15.029I20F020328 BN15 Brassica napus cDNA clone BN15029I20, mRNA sequence.    44   0.045  2
CD832519|CD832519.1 BN40.063J23F011228 BN40 Brassica napus cDNA clone BN40063J23, mRNA sequence.    44   0.052  2
CD832800|CD832800.1 BN40.064L02F011227 BN40 Brassica napus cDNA clone BN40064L02, mRNA sequence.    44   0.054  2
CD835204|CD835204.1 BN45.044L18F020102 BN45 Brassica napus cDNA clone BN45044L18, mRNA sequence.    44   0.054  2
CD832092|CD832092.1 BN40.061P15F011227 BN40 Brassica napus cDNA clone BN40061P15, mRNA sequence.    44   0.055  2
CD835814|CD835814.1 BN45.046M05F011229 BN45 Brassica napus cDNA clone BN45046M05, mRNA sequence.    44   0.056  2
CD823191|CD823191.1 BN25.047P05F020109 BN25 Brassica napus cDNA clone BN25047P05, mRNA sequence.    44   0.056  2
AX058884|AX058884.1 Sequence 23 from Patent WO0075350.             44   0.12   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   181   9e-77
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...    90   4e-37
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...    90   4e-37
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....    91   8e-37
BT051821_1(BT051821|pid:none) Medicago truncatula clone MTYF5_F6...    91   1e-36
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...    89   1e-36
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.        89   4e-36
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...    91   9e-36
AY308827_1(AY308827|pid:none) Helianthus annuus acetoacetyl CoA ...    91   3e-35
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...    89   6e-35

 psg: 0.69  gvh: 0.40  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CFH143 is nuc

>CFH143F.Seq
ATTTTTNTATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTNAGA
ATTGAAACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCT
GGATCAGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGT
AAAGCTAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATT
AAACATATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGA
GCAGTATTACCAAGATCATCACAAGGTGCAACCCGAAGTTAGAGTTGCCACATTATTAGC
AGGTTTACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACA
AGCAATTGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGG
CGGTGTAGAATCAATGAGTTTAAATCCAATGGCATGGGAT----------