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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFH128
Library CF
(Link to library)
Clone ID CFH128
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13416-1
Original site URL
Representative seq. ID CFH128P
(Link to Original site)
Representative DNA sequence 
>CFH128 (CFH128Q) /CSM/CF/CFH1-B/CFH128Q.Seq.d/
GGTTGAAAAAATCATTGATGTTAAANAAGAAGAATTTTTAAAAAATCAANAAATTTTATN
TGAATTTATNAATAAAGGATATGGNTTAATATTAAAAAATGATTTCAAATGTTCAAGTAT
GGTAATGGGXXXXXXXXXXATCAGAGGTAGNTGCAAAGTCATTANAAAAAGCTTTTAATA
GTGATATGGTATCACATATTATTGAAAAATTGGCTGTGNTTNAATTAAAAAATGATGNAA
CCCTTAAAGGAAAGGTTATAGTTGTTGAATCTCTTGATAAAGTTCCAGAAGTAATTGGTT
CAATGAAAACAATGTTTTTAAATGAATTCTTTATTGGTGGTAAATTTATAGATTCAATAA
CCTATGAACAATTTTGTGAAAATTCTTCAGATGATGATCCTCAATCAACAAAAATATTTT
TGTATGGCCTTTTAGTTGATGCTATGAAAACTTTATCATCATTTGCCAAGTATGATAATA
ATGGCGTATTGATAGGAATCGAAGAACAANAATTCTTAAAAGACAATTAAAATGGAATCA
AAATAAATCCCAACAACAAATTACCAAATAATAATAATAATAATAATAATAATAATAATA
ATTTTAATTTTAGCTCAATCATTTTAAAAATATTAAAAAATTAAAAAAACTAAANAATAT
TAGAAAATAATCAATAAATAAATAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
VEKIIDVKXEEFLKNQXILXEFXNKGYGLILKNDFKCSSMVM---

---SEVXAKSLXKAFNSDMVSHIIEKLAVXXLKNDXTLKGKVIVVESLDKVPEVIGSMKT
MFLNEFFIGGKFIDSITYEQFCENSSDDDPQSTKIFLYGLLVDAMKTLSSFAKYDNNGVL
IGIEEQXFLKDN*ngikinpnnklpnnnnnnnnnnnnfnfssiilkilkn*kn*xilenn
q*ink
Translated Amino Acid sequence (All Frames) 
Frame A:
g*knh*c*xrrifkksxnfx*iyx*riwxnikk*fqmfkygng---

---irgxckvixksf***ygityy*kigcxxikk*xnp*rkgysc*is**ssrsnwfnen
nvfk*ilyww*iyrfnnl*til*kffr**ssinknifvwpfs*cyenfiiicqv***wri
drnrrtxilkrqlkwnqnksqqqitk***********f*f*lnhfknikklkklxnirk*
sink*

Frame B:
VEKIIDVKXEEFLKNQXILXEFXNKGYGLILKNDFKCSSMVM---

---SEVXAKSLXKAFNSDMVSHIIEKLAVXXLKNDXTLKGKVIVVESLDKVPEVIGSMKT
MFLNEFFIGGKFIDSITYEQFCENSSDDDPQSTKIFLYGLLVDAMKTLSSFAKYDNNGVL
IGIEEQXFLKDN*ngikinpnnklpnnnnnnnnnnnnfnfssiilkilkn*kn*xilenn
q*ink

Frame C:
lkkslmlxkknf*kixkfyxnlxikdmx*y*kmisnvqvw*w---

---qr*xqshxkklliviwyhillknwlxxn*kmmxplkerl*llnllikfqk*lvq*kq
cf*mnsllvvnl*iq*pmnnfvkilqmmilnqqkyfcmaf*lml*klyhhlpsmiimay*
*esknxns*ktikmesk*ipttnyqiiiiiiiiiiiililaqsf*ky*kikktkxy*kii
nk*in
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFH128 (CFH128Q) /CSM/CF/CFH1-B/CFH128Q.Seq.d/                        997   0.0
SSB807 (SSB807Q) /CSM/SS/SSB8-A/SSB807Q.Seq.d/                        787   0.0
SHC481 (SHC481Q) /CSM/SH/SHC4-D/SHC481Q.Seq.d/                        787   0.0
SFK871 (SFK871Q) /CSM/SF/SFK8-C/SFK871Q.Seq.d/                        787   0.0
SFJ746 (SFJ746Q) /CSM/SF/SFJ7-B/SFJ746Q.Seq.d/                        787   0.0
SFH881 (SFH881Q) /CSM/SF/SFH8-D/SFH881Q.Seq.d/                        787   0.0
CFJ233 (CFJ233Q) /CSM/CF/CFJ2-B/CFJ233Q.Seq.d/                        787   0.0
AFM733 (AFM733Q) /CSM/AF/AFM7-B/AFM733Q.Seq.d/                        787   0.0
AFL327 (AFL327Q) /CSM/AF/AFL3-B/AFL327Q.Seq.d/                        787   0.0
SSG718 (SSG718Q) /CSM/SS/SSG7-A/SSG718Q.Seq.d/                        731   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.   787   0.0    10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    34   7e-06  12
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    32   1e-04  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   2e-04  18
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5.    34   0.003  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           36   0.006  22
AE014305|AE014305.1 Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 2 of 11 of the complete sequence.    32   0.008  13
AL445564|AL445564.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 2/3.    32   0.009  14
AC079789|AC079789.7 Homo sapiens BAC clone RP11-475B2 from 4, complete sequence.    34   0.014  9
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    32   0.017  11
dna update 2004. 1.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_26(AC116551|pid:none) Dictyostelium discoideum chromoso...   233   4e-60
protein update 2008.12.27
PSORT 

 psg: 0.75  gvh: 0.53  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for CFH128 is cyt
5' end seq. ID CFH128F
5' end seq. 
>CFH128F.Seq
GGTTGAAAAAATCATTGATGTTAAANAAGAAGAATTTTTAAAAAATCAANAAATTTTATN
TGAATTTATNAATAAAGGATATGGNTTAATATTAAAAAATGATTTCAAATGTTCAAGTAT
GGTAATGGG----------
Length of 5' end seq. 129
3' end seq. ID CFH128Z
3' end seq. 
>CFH128Z.Seq
----------ATCAGAGGTAGNTGCAAAGTCATTANAAAAAGCTTTTAATAGTGATATGG
TATCACATATTATTGAAAAATTGGCTGTGNTTNAATTAAAAAATGATGNAACCCTTAAAG
GAAAGGTTATAGTTGTTGAATCTCTTGATAAAGTTCCAGAAGTAATTGGTTCAATGAAAA
CAATGTTTTTAAATGAATTCTTTATTGGTGGTAAATTTATAGATTCAATAACCTATGAAC
AATTTTGTGAAAATTCTTCAGATGATGATCCTCAATCAACAAAAATATTTTTGTATGGCC
TTTTAGTTGATGCTATGAAAACTTTATCATCATTTGCCAAGTATGATAATAATGGCGTAT
TGATAGGAATCGAAGAACAANAATTCTTAAAAGACAATTAAAATGGAATCAAAATAAATC
CCAACAACAAATTACCAAATAATAATAATAATAATAATAATAATAATAATAATTTTAATT
TTAGCTCAATCATTTTAAAAATATTAAAAAATTAAAAAAACTAAANAATATTAGAAAATA
ATCAATAAATAAATAAAT
Length of 3' end seq. 548
Connected seq. ID CFH128P
Connected seq. 
>CFH128P.Seq
GGTTGAAAAAATCATTGATGTTAAANAAGAAGAATTTTTAAAAAATCAANAAATTTTATN
TGAATTTATNAATAAAGGATATGGNTTAATATTAAAAAATGATTTCAAATGTTCAAGTAT
GGTAATGGG----------ATCAGAGGTAGNTGCAAAGTCATTANAAAAAGCTTTTAATA
GTGATATGGTATCACATATTATTGAAAAATTGGCTGTGNTTNAATTAAAAAATGATGNAA
CCCTTAAAGGAAAGGTTATAGTTGTTGAATCTCTTGATAAAGTTCCAGAAGTAATTGGTT
CAATGAAAACAATGTTTTTAAATGAATTCTTTATTGGTGGTAAATTTATAGATTCAATAA
CCTATGAACAATTTTGTGAAAATTCTTCAGATGATGATCCTCAATCAACAAAAATATTTT
TGTATGGCCTTTTAGTTGATGCTATGAAAACTTTATCATCATTTGCCAAGTATGATAATA
ATGGCGTATTGATAGGAATCGAAGAACAANAATTCTTAAAAGACAATTAAAATGGAATCA
AAATAAATCCCAACAACAAATTACCAAATAATAATAATAATAATAATAATAATAATAATA
ATTTTAATTTTAGCTCAATCATTTTAAAAATATTAAAAAATTAAAAAAACTAAANAATAT
TAGAAAATAATCAATAAATAAATAAAT
Length of connected seq. 677
Full length Seq ID -
Full length Seq. -
Length of full length seq. -