CFG871
Library CF
(Link to library)
Clone ID CFG871
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFG871P
(Link to Original site)
Representative DNA sequence
>CFG871 (CFG871Q) /CSM/CF/CFG8-C/CFG871Q.Seq.d/
ACTTNCAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGG
AAAGXXXXXXXXXXTTTTGGAACGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAA
TCCNCTTGAANAAGGTGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAATT
CNCTGAAGGTNTTGAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAA
ACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGC
TCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNT
TGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCAC
AAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGT
TAACGTAAATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTNAAAAANA
GACCGGAGGTGGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
txkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWK---

---LERLTKAYKTIKIGNPLEXGVLVGPLXTQSAVKXFXEGXEXIKXQGGKVVIGGNKLX
ISGGNFVEPTVVAIEHDAPXVXTELFVPIXYIMKFKNXDDAFAWNNEVPQGXSXSLFTNN
QXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGXKXTGGG


Translated Amino Acid sequence (All Frames)
Frame A:
txkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWK---

---fwnv*pkptkplksvixlxkvf**vxsxpkallxnslkvlxk*kxkvvrsslvvins
xsvvetllnqpslplnmmlqx*xlnxlfqxxt**nskxltmllpgimksxkvxhxpxsqt
ikxissngldxpdltvx*lt*mxlxtxlklvxplevkxrpevv

Frame B:
lxknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*favtsnygk---

---fgtfnqslqnh*nr*sx*xrcfsrsxphpkrc*xix*rx*xnkkxrw*grhww**tr
xqwwklc*tnrrch*t*csnxkx*txcsnxxhneiqkx*rcfcle**spxrxxxfpxhkq
skxylqmawtxri*lwxs*rkxsyxrx*nwwxxwrxkxdrrw

Frame C:
xqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**syc
nc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*
nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpm
crtwleccnlndlr*rpime---

---LERLTKAYKTIKIGNPLEXGVLVGPLXTQSAVKXFXEGXEXIKXQGGKVVIGGNKLX
ISGGNFVEPTVVAIEHDAPXVXTELFVPIXYIMKFKNXDDAFAWNNEVPQGXSXSLFTNN
QXNIFKWLGPTGSDCGIVNVNXATNGAEIGGAXGGXKXTGGG

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG871 (CFG871Q) /CSM/CF/CFG8-C/CFG871Q.Seq.d/ 1191 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1187 0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1187 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1187 0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1187 0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/ 1187 0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1187 0.0
SFF292 (SFF292Q) /CSM/SF/SFF2-D/SFF292Q.Seq.d/ 1187 0.0
SFE649 (SFE649Q) /CSM/SF/SFE6-C/SFE649Q.Seq.d/ 1187 0.0
SFE588 (SFE588Q) /CSM/SF/SFE5-D/SFE588Q.Seq.d/ 1187 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 811 0.0 6
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 7e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 2e-08 2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 2e-07 3
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence. 42 3e-05 3
CD733534|CD733534.1 4045967 1GAL - Chicken Intestinal Lymphocyte Gallus gallus cDNA clone 1GAL_17H10 5', mRNA sequence. 42 3e-05 3
BG711333| (S74728) antiquitin=26g turgor protein homolog [human, kidney, Peptide, 511 aa] [Homo sapiens]G, mRNA sequence. 42 3e-05 3
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence. 42 4e-05 3
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence. 42 4e-05 3
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence. 42 4e-05 3
dna update 2004. 1.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 384 e-105
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 239 9e-62
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 236 1e-60
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 235 2e-60
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 230 7e-59
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 229 9e-59
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 229 2e-58
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 228 3e-58
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 228 3e-58
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 226 1e-57
protein update 2009. 5.14
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.83 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for CFG871 is nuc

5' end seq. ID CFG871F
5' end seq.
>CFG871F.Seq
ACTTNCAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGG
AAAG----------
Length of 5' end seq. 604
3' end seq. ID CFG871Z
3' end seq.
>CFG871Z.Seq
----------TTTTGGAACGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAATCCN
CTTGAANAAGGTGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAATTCNCT
GAAGGTNTTGAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTC
GANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCA
ATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGAC
GATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCACAAAC
AATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAAC
GTAAATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTNAAAAANAGACC
GGAGGTGGTA
Length of 3' end seq. 480
Connected seq. ID CFG871P
Connected seq.
>CFG871P.Seq
ACTTNCAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAA
TATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGA
AAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATT
GCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCA
GCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATT
GGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGT
AAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCA
ACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATT
TTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCA
TGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGG
AAAG----------TTTTGGAACGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAA
TCCNCTTGAANAAGGTGTTTTAGTAGGTCCNCTCCNCACCCAAAGCGCTGTTAAANAATT
CNCTGAAGGTNTTGAANAAATAAAAAANCAAGGTGGTAAGGTCGTCATTGGTGGTAATAA
ACTCGANATCAGTGGTGGAAACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGC
TCCAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNT
TGACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCAC
AAACAATCAAAANAATATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGT
TAACGTAAATGNAGCTACNAACGGNGCTGAAATTGGTGGNGCCNTTGGAGGTNAAAAANA
GACCGGAGGTGGTA
Length of connected seq. 1084
Full length Seq ID -
Full length Seq. -
Length of full length seq. -