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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG825
Library CF
(Link to library)
Clone ID CFG825
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFG825P
(Link to Original site)
Representative DNA sequence 
>CFG825 (CFG825Q) /CSM/CF/CFG8-B/CFG825Q.Seq.d/
ATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTNGTATATTATTTTTTTTNCCXXXXXXXXXXAAGGTA
GTNATACCTTGAAAATGTCAAAGCCAAAATCCAAGACAANAAGGTTTCCCCCAGATCAAC
AANGATTATTTTCGCTGGTAAAAATTANAAGATGNTCGTACTCTCTCTGACTACAACATC
CAAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGGTGGTATGCAAATCTTTT
GTTAAANCTCTCACTGGTAAACCCATCACCTTGGAAGTCGAAGGTAGTGATANCATTGAA
AATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATT
TTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACCTTG
ACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCC
AAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAA
CAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCAT
TTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACT
ATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGAC
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTCTCGATTACAACATTCAAAAGGAATCCACTCTCCATTAGTTCTCAGATT
AAGAGGGGAACTAAGTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iffck***liiif*ILYFFKHIKIFFFLXILFFX---

---GSXTLKMSKPKSKTXRFPPDQQXLFSLVKIXRXSYSL*lqhpkknplsi*f*d*egg
mqifc*xshw*thhlgsrr**xh*kcqsqnprqrrystrsttshfrw*tirrwpysl*lq
hpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kcqsqnsrqrrystrstkin
frw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr*nyhlgsrr***h*kc*s
qnprqrrystrsttshfrw*tirrwsysldyniqkestlh*fsd*egn*v
Translated Amino Acid sequence (All Frames) 
Frame A:
iffck***liiif*ILYFFKHIKIFFFLXILFFX---

---kvvip*kcqsqnprqxgfpqinxdyfrw*klxdxrtlsdyniqkrihspfsfkikrv
vcksfvkxltgkpitlevegsdxienvkakiqdkegippdqqrlifagkqledgrtlsdy
niqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrl
ifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvk
akiqdkegippdqqrlifagkqledgrtlsittfkrnplsissqikrgtkf

Frame B:
yffvnsnn***ffkffiflni*kfffsxvyyffx---

---r*xylenvkakiqdxkvsprstxiifagknxkmxvlsltttskkestlhlvlrlrgw
yanlllxlslvnpspwkskvvixlkmskpksktkkvfhqinnvsfslvnn*kmavlslit
tskknplsi*fsd*evvcksl*kp*lvrpshwkskvlitlkmskpkfktkkvfhqinkd*
fslvnn*kmvvlslttifkrnplsi*fsd*evvcksllkl*qvklspwkskvvitlkmlk
pksktkkvfhqinnvsfslvnn*kmvvlsrlqhskgihsplvlrlrgels

Frame C:
ifl*iviinnnflnslff*tyknfffpxyiiffx---

---GSXTLKMSKPKSKTXRFPPDQQXLFSLVKIXRXSYSL*lqhpkknplsi*f*d*egg
mqifc*xshw*thhlgsrr**xh*kcqsqnprqrrystrsttshfrw*tirrwpysl*lq
hpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kcqsqnsrqrrystrstkin
frw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr*nyhlgsrr***h*kc*s
qnprqrrystrsttshfrw*tirrwsysldyniqkestlh*fsd*egn*v
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG825 (CFG825Q) /CSM/CF/CFG8-B/CFG825Q.Seq.d/                       1671   0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/                       1507   0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/                       1473   0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/                       1473   0.0
VFI435 (VFI435Q) /CSM/VF/VFI4-B/VFI435Q.Seq.d/                       1451   0.0
SFD385 (SFD385Q) /CSM/SF/SFD3-D/SFD385Q.Seq.d/                       1421   0.0
CFB835 (CFB835Q) /CSM/CF/CFB8-B/CFB835Q.Seq.d/                       1407   0.0
AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/                       1407   0.0
AFO679 (AFO679Q) /CSM/AF/AFO6-D/AFO679Q.Seq.d/                       1405   0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/                       1396   0.0
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.  1203   0.0    9
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   718   0.0    8
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   718   0.0    8
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   718   0.0    7
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   674   0.0    7
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   751   0.0    5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   751   0.0    5
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   605   0.0    5
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      337   e-164  8
Y17558|Y17558.1 Candida albicans UB14 gene.                       418   e-138  8
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   409   e-114
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   406   e-113
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   406   e-113
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   406   e-113
BC127395_1(BC127395|pid:none) Danio rerio zgc:153686, mRNA (cDNA...   395   e-112
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   398   e-111
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   398   e-111
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   398   e-111
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   398   e-111
AK056939_1(AK056939|pid:none) Homo sapiens cDNA FLJ32377 fis, cl...   396   e-110
protein update 2009. 5.14
PSORT 

 psg: 1.00  gvh: 0.72  alm: 0.58  top: 0.57  tms: 0.00  mit: 0.38  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  8.0 %: plasma membrane
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: nuclear

>> prediction for CFG825 is exc
5' end seq. ID CFG825F
5' end seq. 
>CFG825F.Seq
ATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTNGTATATTATTTTTTTTNCC----------
Length of 5' end seq. 104
3' end seq. ID CFG825Z
3' end seq. 
>CFG825Z.Seq
----------AAGGTAGTNATACCTTGAAAATGTCAAAGCCAAAATCCAAGACAANAAGG
TTTCCCCCAGATCAACAANGATTATTTTCGCTGGTAAAAATTANAAGATGNTCGTACTCT
CTCTGACTACAACATCCAAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGGT
GGTATGCAAATCTTTTGTTAAANCTCTCACTGGTAAACCCATCACCTTGGAAGTCGAAGG
TAGTGATANCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGA
TCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTA
CAACATCCAAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAAT
CTTTGTAAAAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACAT
TGAAAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATT
AATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAA
GGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAAC
TTTAACAGGTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAA
AGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGG
TAAACAATTAGAAGATGGTCGTACTCTCTCGATTACAACATTCAAAAGGAATCCACTCTC
CATTAGTTCTCAGATTAAGAGGGGAACTAAGTTT
Length of 3' end seq. 864
Connected seq. ID CFG825P
Connected seq. 
>CFG825P.Seq
ATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTNGTATATTATTTTTTTTNCC----------AAGGTA
GTNATACCTTGAAAATGTCAAAGCCAAAATCCAAGACAANAAGGTTTCCCCCAGATCAAC
AANGATTATTTTCGCTGGTAAAAATTANAAGATGNTCGTACTCTCTCTGACTACAACATC
CAAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGGTGGTATGCAAATCTTTT
GTTAAANCTCTCACTGGTAAACCCATCACCTTGGAAGTCGAAGGTAGTGATANCATTGAA
AATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATT
TTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACCTTG
ACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCC
AAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAA
CAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCAT
TTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACT
ATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGAC
AAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTCTCGATTACAACATTCAAAAGGAATCCACTCTCCATTAGTTCTCAGATT
AAGAGGGGAACTAAGTTT
Length of connected seq. 968
Full length Seq ID -
Full length Seq. -
Length of full length seq. -