CFG822
Library CF
(Link to library)
Clone ID CFG822
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08780-1
Original site URL
Representative seq. ID CFG822P
(Link to Original site)
Representative DNA sequence
>CFG822 (CFG822Q) /CSM/CF/CFG8-A/CFG822Q.Seq.d/
GAATTGAAAATTTCTGATGAAGAATATAAAAAGAGTGAATCTGCATTANAAACACCANAT
CCAACATTATTACNAAAGTTTCAAATTAATTTTTATCAAACTATTGAATCNATTAATCAA
GTATTTXXXXXXXXXXTGGTGGTTCAAGTAGTAGTGAATTATTTTTAGNCGCACATATAA
AGAANANTGCATGGTCNCCTGATAGTCNAAGATTGGCTGTCATCTTTTATTTAAATAGCA
AGAGTAGAAATAATGATACNAATNTGNGCNATCTATANAATTANAACTTATCCTNAATTT
TCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTT
GTCCCNAATTATAAAAAAGGTTCTTTATTATCCATTGCCTACAATGATGGAACAATTAAA
TTTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACA
sequence update 2001. 6. 1
Translated Amino Acid sequence
ELKISDEEYKKSESALXTPXPTLLXKFQINFYQTIESINQVF---

---GGSSSSELFLXAHIKXXAWSPDSXRLAVIFYLNSKSRNNDTNXXXLXNXNLSXIFCN
TKRFHKVKRSINSISFFCPXL*krffiihclq*wnn*ifpiiisi*tirk*rfy


Translated Amino Acid sequence (All Frames)
Frame A:
ELKISDEEYKKSESALXTPXPTLLXKFQINFYQTIESINQVF---

---wwfk***iifxrtykexcmvx**skigchllfk*qe*k**yxxxxsixlxlilnfl*
hqevs*gqkinqfnqfllsxiikkvlyyplptmmeqlnfshyyininnkkikil

Frame B:
n*kflmknikrvnlhxkhxiqhyyxsfklifikllnxliky---

---GGSSSSELFLXAHIKXXAWSPDSXRLAVIFYLNSKSRNNDTNXXXLXNXNLSXIFCN
TKRFHKVKRSINSISFFCPXL*krffiihclq*wnn*ifpiiisi*tirk*rfy

Frame C:
ienf**ri*ke*icixntxsniitkvsn*flsny*ix*ssi---

---vvqvvvnyf*xhi*rxxhgxlivxdwlssfi*iarveimixxxaiyxixtypxfsvt
prgfirskdqsiqsvsfvpnykkgsllsiayndgtikffpllyqykq*enkdft

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG822 (CFG822Q) /CSM/CF/CFG8-A/CFG822Q.Seq.d/ 773 0.0
VFI871 (VFI871Q) /CSM/VF/VFI8-C/VFI871Q.Seq.d/ 553 e-157
SSK827 (SSK827Q) /CSM/SS/SSK8-B/SSK827Q.Seq.d/ 553 e-157
AFI409 (AFI409Q) /CSM/AF/AFI4-A/AFI409Q.Seq.d/ 553 e-157
AFH742 (AFH742Q) /CSM/AF/AFH7-B/AFH742Q.Seq.d/ 553 e-157
CFG838 (CFG838Q) /CSM/CF/CFG8-B/CFG838Q.Seq.d/ 496 e-139
SSE416 (SSE416Q) /CSM/SS/SSE4-A/SSE416Q.Seq.d/ 143 3e-33
VSB478 (VSB478Q) /CSM/VS/VSB4-D/VSB478Q.Seq.d/ 105 6e-22
SSC814 (SSC814Q) /CSM/SS/SSC8-A/SSC814Q.Seq.d/ 38 0.12
SSA679 (SSA679Q) /CSM/SS/SSA6-D/SSA679Q.Seq.d/ 38 0.12

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 226 0.0 5
AE014828|AE014828.1 Plasmodium falciparum 3D7 chromosome 14 section 13 of 13 of the complete sequence. 44 5e-04 10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.006 14
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4. 32 0.010 10
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence. 34 0.011 9
BX927181|BX927181.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-262H13. 46 0.012 4
AC141814|AC141814.1 Apis mellifera clone CH224-61C3, WORKING DRAFT SEQUENCE, 24 unordered pieces. 40 0.013 6
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 32 0.020 12
AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 36 0.027 15
AC134452|AC134452.4 Mus musculus BAC clone RP24-252M6 from chromosome 16, complete sequence. 32 0.038 6
dna update 2004. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC115581_9(AC115581|pid:none) Dictyostelium discoideum chromosom... 119 4e-26
BC077988_1(BC077988|pid:none) Xenopus laevis achalasia, adrenoco... 39 0.015
AK088247_1(AK088247|pid:none) Mus musculus 2 days neonate thymus... 37 0.28
AK087134_1(AK087134|pid:none) Mus musculus 0 day neonate lung cD... 37 0.28
AY891872_1(AY891872|pid:none) Synthetic construct Homo sapiens c... 36 0.47
AK222509_1(AK222509|pid:none) Homo sapiens mRNA for achalasia, a... 36 0.47
(Q9NRG9) RecName: Full=Aladin; AltName: Full=Adracalin; &AF2260... 36 0.47
EF147038_1(EF147038|pid:none) Populus trichocarpa clone WS01226_... 35 0.62
AK000833_1(AK000833|pid:none) Homo sapiens cDNA FLJ20826 fis, cl... 35 0.62
AK241371_1(AK241371|pid:none) Oryza sativa Japonica Group cDNA, ... 35 1.1
protein update 2009. 5.14
PSORT

psg: 0.75 gvh: 0.48 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
12.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFG822 is cyt

5' end seq. ID CFG822F
5' end seq.
>CFG822F.Seq
GAATTGAAAATTTCTGATGAAGAATATAAAAAGAGTGAATCTGCATTANAAACACCANAT
CCAACATTATTACNAAAGTTTCAAATTAATTTTTATCAAACTATTGAATCNATTAATCAA
GTATTT----------
Length of 5' end seq. 126
3' end seq. ID CFG822Z
3' end seq.
>CFG822Z.Seq
----------TGGTGGTTCAAGTAGTAGTGAATTATTTTTAGNCGCACATATAAAGAANA
NTGCATGGTCNCCTGATAGTCNAAGATTGGCTGTCATCTTTTATTTAAATAGCAAGAGTA
GAAATAATGATACNAATNTGNGCNATCTATANAATTANAACTTATCCTNAATTTTCTGTA
ACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTTGTCCCN
AATTATAAAAAAGGTTCTTTATTATCCATTGCCTACAATGATGGAACAATTAAATTTTTC
CCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACA
Length of 3' end seq. 335
Connected seq. ID CFG822P
Connected seq.
>CFG822P.Seq
GAATTGAAAATTTCTGATGAAGAATATAAAAAGAGTGAATCTGCATTANAAACACCANAT
CCAACATTATTACNAAAGTTTCAAATTAATTTTTATCAAACTATTGAATCNATTAATCAA
GTATTT----------TGGTGGTTCAAGTAGTAGTGAATTATTTTTAGNCGCACATATAA
AGAANANTGCATGGTCNCCTGATAGTCNAAGATTGGCTGTCATCTTTTATTTAAATAGCA
AGAGTAGAAATAATGATACNAATNTGNGCNATCTATANAATTANAACTTATCCTNAATTT
TCTGTAACACCAAGAGGTTTCATAAGGTCAAAAGATCAATCAATTCAATCAGTTTCTTTT
GTCCCNAATTATAAAAAAGGTTCTTTATTATCCATTGCCTACAATGATGGAACAATTAAA
TTTTTCCCATTATTATATCAATATAAACAATAAGAAAATAAAGATTTTACA
Length of connected seq. 461
Full length Seq ID -
Full length Seq. -
Length of full length seq. -