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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG807
Library CF
(Link to library)
Clone ID CFG807
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFG807P
(Link to Original site)
Representative DNA sequence 
>CFG807 (CFG807Q) /CSM/CF/CFG8-A/CFG807Q.Seq.d/
ATATTTTTTTGTAAATNGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTACATATTAAT
TAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAG
GTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAG
ATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGCACTCTTTCTGATT
ACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAAGGTAGNGATAACA
TTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGAT
TAATTTTCGCTGGTAAACAATTNGAAGATGGTCGNACTCTCTCTGACTACAACATTCAAA
AGGAATCCACTCCTCCNCTTGGNTCTNAXXXXXXXXXXCAAAAAGAATCCNCTCTCCCAT
TTAGTTTTAAGATTAANAGGGGGTATGCAAATTTTTGTTAAAACTCCTCNCTGGTAAAAC
CATCNCCTTGGAAGTCGAAGGTAGTGATAACATTNAAAATGTCAAAAGCCAAAATCCAAG
NCAAAGAAGGTATTCCCCCAGATCAACAACGTTTCATTTTCGNTGGTAAACAATTANAAN
ATGGCCGNACTNTNTNTGATTACAACATCCAAAAAGAATCCCCTNTCCATTTAGTTNTCA
NATTAAAAGGTGGTATGCAAATNTTTGTAAAAACCTTGACTGGTAANACCNTCNCATTGG
AAGTNGAAGGTTTTGATAACATTNAAAATGTCAAAGCCAAAATTCAANACAAANAAGGTA
TTCCCCCAGATCAACAAANATTAATTTTNGCTGGTAAACAATTANAANATGGTNGNACTC
TCTCTGACTACAATATTCAAAAGGAATCCCCTNTCCNTTTAGTTNTCANATTAAAAGGTG
GNATGCAAATNTTTGTTAAAACTTTAACAGGTAAAACNATCCCCNTGGAAGTCGAAGGTA
GTGATAACNTTGAAAATGTTAAAGCCNAAANCCNAGACAAANAAGGNATTCCCCCAGATC
AACAACGTNTCATTTTCGCTGGNAAACAATTANAANAAGGTCGGACNCNCNCCGATTACA
ACNTTCAAAAGGAANCCCCNCNCCCTTAGNTCNCAGATTAAAAGGGGGNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifl*xviinnnflnslff*tyknfffplyiiffsifty*LIMQIFVKTLTGKTITLEVEG
XDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLXLXGGMQI
FVKTLTGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQK
ESTPPLGS---

---KKNPLSHLVLRLXGGMQIFVKTPXW*nhxlgsrr***hxkcqkpkskxkkvfpqinn
vsfsxvnnxxmaxlxxittskknplsi*xsx*kvvckxl*kp*lvxpshwkxkvlitxkm
skpkfxtxkvfpqinkx*fxlvnnxxmvxlslttifkrnplsx*xsx*kvxckxllkl*q
vkxspwkskvvitlkmlkpkxxtxkxfpqinnvsfslxnnxxkvgxxpittfkrxpxxlx
sqikrg
Translated Amino Acid sequence (All Frames) 
Frame A:
iffckx**liiif*ilyffkhikiffflcilfffpflhin*lckfllklslvkpshwklk
vxttlkmsrlkfktkkvfhqinkd*sllvnn*kmvalflittfkrnplsi*flx*xxvck
sl*klslvkpsp*rlkvxitlkmlklkfktkkvshqinkd*fslvnnxkmvxlsltttfk
rnpllxlxl---

---qkesxlpfsfkixrgyanfc*nsslvkpspwkskvvitxkmskakiqxkegippdqq
rfifxgkqlxxgrtxxdyniqkespxhlvxxlkggmqxfvktltgxtxxlevegfdnixn
vkakiqxkxgippdqqxlixagkqlxxgxtlsdyniqkespxxlvxxlkggmqxfvktlt
gktipxevegsdnxenvkaxxxdkxgippdqqrxifagkqlxxgrtxxdynxqkexpxp*
xxd*kgx

Frame B:
yffvnxnn***ffkffiflni*kfffsfvyyfffhfyilinyanfc*nshw*nhhigs*r
*xqh*kcqg*nsrqrrystrstkinlcw*tirrwshsf*lqhskgihspfssxixrxyan
lcknshw*nhhlrg*r*x*h*kc*s*nsrqrryptrstkinfrw*tixrwsxsl*lqhsk
gihssxwxx---

---KKNPLSHLVLRLXGGMQIFVKTPXW*nhxlgsrr***hxkcqkpkskxkkvfpqinn
vsfsxvnnxxmaxlxxittskknplsi*xsx*kvvckxl*kp*lvxpshwkxkvlitxkm
skpkfxtxkvfpqinkx*fxlvnnxxmvxlslttifkrnplsx*xsx*kvxckxllkl*q
vkxspwkskvvitlkmlkpkxxtxkxfpqinnvsfslxnnxxkvgxxpittfkrxpxxlx
sqikrg

Frame C:
ifl*xviinnnflnslff*tyknfffplyiiffsifty*LIMQIFVKTLTGKTITLEVEG
XDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLXLXGGMQI
FVKTLTGKTITLEVEGXDNIENVKAKIQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQK
ESTPPLGS---

---krixspi*f*d*xgvckfllkllxgktixlevegsdnixnvksqnpxqrrysprstt
fhfrw*tixxwpxxx*lqhpkripxpfsxxikrwyanxcknldw*xxxigsxrf**hxkc
qsqnsxqxrysprstxinfxw*tixxwxxsl*lqyskgipxpfsxxikrwxanxc*nfnr
*nxpxgsrr***x*kc*sxxprqxrxsprsttxhfrwxtixxrsdxxrlqxskgxpxplx
xrlkgg
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG807 (CFG807Q) /CSM/CF/CFG8-A/CFG807Q.Seq.d/                       1917   0.0
SFE557 (SFE557Q) /CSM/SF/SFE5-C/SFE557Q.Seq.d/                        912   0.0
CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/                        908   0.0
AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/                        904   0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/                        898   0.0
AFK447 (AFK447Q) /CSM/AF/AFK4-B/AFK447Q.Seq.d/                        898   0.0
SFD385 (SFD385Q) /CSM/SF/SFD3-D/SFD385Q.Seq.d/                        896   0.0
CFB835 (CFB835Q) /CSM/CF/CFB8-B/CFB835Q.Seq.d/                        888   0.0
AFJ658 (AFJ658Q) /CSM/AF/AFJ6-C/AFJ658Q.Seq.d/                        888   0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/                        888   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   827   0.0    6
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   529   0.0    6
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   345   0.0    7
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   321   0.0    8
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   337   0.0    7
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   545   e-168  5
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   545   e-168  5
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   448   e-149  4
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   206   e-133  5
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   206   e-133  5
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   520   e-146
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   516   e-145
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   516   e-145
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   516   e-145
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   506   e-142
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   505   e-141
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   505   e-141
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   505   e-141
BC049473_1(BC049473|pid:none) Danio rerio zgc:172187, mRNA (cDNA...   503   e-141
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD...   503   e-141
protein update 2009. 5.14
PSORT 

 psg: 0.78  gvh: 0.38  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for CFG807 is nuc
5' end seq. ID CFG807F
5' end seq. 
>CFG807F.Seq
ATATTTTTTTGTAAATNGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTACATATTAAT
TAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAG
GTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAG
ATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGCACTCTTTCTGATT
ACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAAGGTAGNGATAACA
TTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGAT
TAATTTTCGCTGGTAAACAATTNGAAGATGGTCGNACTCTCTCTGACTACAACATTCAAA
AGGAATCCACTCCTCCNCTTGGNTCTNA----------
Length of 5' end seq. 568
3' end seq. ID CFG807Z
3' end seq. 
>CFG807Z.Seq
----------CAAAAAGAATCCNCTCTCCCATTTAGTTTTAAGATTAANAGGGGGTATGC
AAATTTTTGTTAAAACTCCTCNCTGGTAAAACCATCNCCTTGGAAGTCGAAGGTAGTGAT
AACATTNAAAATGTCAAAAGCCAAAATCCAAGNCAAAGAAGGTATTCCCCCAGATCAACA
ACGTTTCATTTTCGNTGGTAAACAATTANAANATGGCCGNACTNTNTNTGATTACAACAT
CCAAAAAGAATCCCCTNTCCATTTAGTTNTCANATTAAAAGGTGGTATGCAAATNTTTGT
AAAAACCTTGACTGGTAANACCNTCNCATTGGAAGTNGAAGGTTTTGATAACATTNAAAA
TGTCAAAGCCAAAATTCAANACAAANAAGGTATTCCCCCAGATCAACAAANATTAATTTT
NGCTGGTAAACAATTANAANATGGTNGNACTCTCTCTGACTACAATATTCAAAAGGAATC
CCCTNTCCNTTTAGTTNTCANATTAAAAGGTGGNATGCAAATNTTTGTTAAAACTTTAAC
AGGTAAAACNATCCCCNTGGAAGTCGAAGGTAGTGATAACNTTGAAAATGTTAAAGCCNA
AANCCNAGACAAANAAGGNATTCCCCCAGATCAACAACGTNTCATTTTCGCTGGNAAACA
ATTANAANAAGGTCGGACNCNCNCCGATTACAACNTTCAAAAGGAANCCCCNCNCCCTTA
GNTCNCAGATTAAAAGGGGGNA
Length of 3' end seq. 732
Connected seq. ID CFG807P
Connected seq. 
>CFG807P.Seq
ATATTTTTTTGTAAATNGTAATAATTAATAATAATTTTTTAAATTCTTTATTTTTTTAAA
CATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTTTTACATATTAAT
TAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACATTGGAAGTTGAAG
GTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCACCAG
ATCAACAAAGATTAATCTTTGCTGGTAAACAATTAGAAGATGGTCGCACTCTTTCTGATT
ACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACTCTCACTGGTAAAACCATCACCTTAGAGGTTGAAGGTAGNGATAACA
TTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAACAAAGAT
TAATTTTCGCTGGTAAACAATTNGAAGATGGTCGNACTCTCTCTGACTACAACATTCAAA
AGGAATCCACTCCTCCNCTTGGNTCTNA----------CAAAAAGAATCCNCTCTCCCAT
TTAGTTTTAAGATTAANAGGGGGTATGCAAATTTTTGTTAAAACTCCTCNCTGGTAAAAC
CATCNCCTTGGAAGTCGAAGGTAGTGATAACATTNAAAATGTCAAAAGCCAAAATCCAAG
NCAAAGAAGGTATTCCCCCAGATCAACAACGTTTCATTTTCGNTGGTAAACAATTANAAN
ATGGCCGNACTNTNTNTGATTACAACATCCAAAAAGAATCCCCTNTCCATTTAGTTNTCA
NATTAAAAGGTGGTATGCAAATNTTTGTAAAAACCTTGACTGGTAANACCNTCNCATTGG
AAGTNGAAGGTTTTGATAACATTNAAAATGTCAAAGCCAAAATTCAANACAAANAAGGTA
TTCCCCCAGATCAACAAANATTAATTTTNGCTGGTAAACAATTANAANATGGTNGNACTC
TCTCTGACTACAATATTCAAAAGGAATCCCCTNTCCNTTTAGTTNTCANATTAAAAGGTG
GNATGCAAATNTTTGTTAAAACTTTAACAGGTAAAACNATCCCCNTGGAAGTCGAAGGTA
GTGATAACNTTGAAAATGTTAAAGCCNAAANCCNAGACAAANAAGGNATTCCCCCAGATC
AACAACGTNTCATTTTCGCTGGNAAACAATTANAANAAGGTCGGACNCNCNCCGATTACA
ACNTTCAAAAGGAANCCCCNCNCCCTTAGNTCNCAGATTAAAAGGGGGNA
Length of connected seq. 1300
Full length Seq ID -
Full length Seq. -
Length of full length seq. -