NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG784
Library CF
(Link to library)
Clone ID CFG784
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CFG784P
(Link to Original site)
Representative DNA sequence 
>CFG784 (CFG784Q) /CSM/CF/CFG7-D/CFG784Q.Seq.d/
TGTACATCTAATAAATTTCTGAAGATGTGGGTAAAGCAATTAATNTAAAATTAAATGAAA
ATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAATCAAGTTATTG
AAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAAACATGATTCAT
TAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTAC
CAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGGCCAAAATAATA
ATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACAATTCCAAAGTA
TAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACTGGTGGTACCTGGTGAT
AGTGATTCAAAGACCACCAATGAGGCAATTATCTTTTCATCAAAGGTATCAACTACTGAC
CGTCXXXXXXXXXXGGTACCACTGGTGATACATTGGCTCAATACATTCGCTGGTACAGAT
TCAGTCGGGTGTANCTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGG
TAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGA
TAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACC
TGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCG
TAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCA
AGGAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCA
ACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAA
TTTACAAGAAGATCAAGAACAATATGAACNT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ctsnkflkmwvkqlx*n*mkilkklkm*lynlrmlqikllkn*klnikdkny*vk*nmih
*etlqqitfgdylikfkviyqkttikfqklkkhfqvakiiisvavlviqlvlvlphnskv
*MVYPELHNLVVVQLVVPGDSDSKTTNEAIIFSSKVSTTDR---

---VPLVIHWLNTFAGTDSVGCXWFPYNYKDF*fdcww*i*l*stih**ilrfnsitr**
rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywstksrr
*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieftrrsrti*t
Translated Amino Acid sequence (All Frames) 
Frame A:
ctsnkflkmwvkqlx*n*mkilkklkm*lynlrmlqikllkn*klnikdkny*vk*nmih
*etlqqitfgdylikfkviyqkttikfqklkkhfqvakiiisvavlviqlvlvlphnskv
*MVYPELHNLVVVQLVVPGDSDSKTTNEAIIFSSKVSTTDR---

---gttgdtlaqyirwyrfsrvxlvsi*lqrlli*llvvnltlinntlinptvqfhhkim
kklkrdykvlinnyknnhlqsinq*nlki*ki*mmk*fvillrkckfnvkikilvnkike
iknn*liykienlvytkinkilnkrkepinkn*simn*iykkiknnmn

Frame B:
vhlinf*rcg*sn*xkik*ky*ks*rcscti*ecckssy*riks*tsktriir*skt*fi
krlcnklhlgit**nsklftkrqq*sfks*rsifkwpk**yr*qyw*fnwc*yfptipky
kwfirsfti*w*fnwwylviviqrppmrqlsfhqryqlltv---

---VPLVIHWLNTFAGTDSVGCXWFPYNYKDF*fdcww*i*l*stih**ilrfnsitr**
rn*keitkcsstitrtitcnlsinei*rskkfr**sns*ys*gnanst*ksrywstksrr
*rtin*ftk*rtwfiqkstrs*treksqstrinql*ieftrrsrti*t

Frame C:
yi**isedvgkainxklneniekvedvvvqfenvanqvieelkvehqrqellgevkhdsl
rdsatnyiwglldkiqsylpkdnnkvskveeafssgqnnnigssigdstgastspqfqsi
nglsgasqssgsstggtw***fkdhq*gnylfikginy*p---

---yhw*yigsihslvqiqsgvxgfhiitktfnliaggkfnsdqqyidksygsipsqdne
eikkrlqsahqqlqeqspaiyqsmksedlknlddevirntlkemqiqrenqdigqqnqgd
keqlidlqnrepglyknqqdlkqekranqqelinyelnlqedqeqyex
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG784 (CFG784Q) /CSM/CF/CFG7-D/CFG784Q.Seq.d/                       1889   0.0
SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/                        936   0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/                        936   0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/                        936   0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/                        936   0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/                        936   0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/                        936   0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/                        936   0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/                        936   0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/                        936   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   862   0.0    5
AP004828|AP004828.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 7/10.    38   7e-07  15
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   8e-07  13
AE016747|AE016747.1 Staphylococcus epidermidis ATCC 12228, section 4 of 9 of the complete genome.    38   4e-06  12
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    36   9e-06  19
AP003135|AP003135.2 Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome, section 7/10.    38   3e-05  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   6e-05  18
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   8e-05  16
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    36   1e-04  13
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-04  23
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   289   9e-77
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    52   2e-05
AP006628_47(AP006628|pid:none) Onion yellows phytoplasma OY-M DN...    52   4e-05
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    50   9e-05
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    50   1e-04
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    50   2e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM...    49   2e-04
AP006628_380(AP006628|pid:none) Onion yellows phytoplasma OY-M D...    49   2e-04
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    49   2e-04
EU930276_1(EU930276|pid:none) Simulium vittatum clone SV-38 hypo...    49   2e-04
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: peroxisomal

>> prediction for CFG784 is cyt
5' end seq. ID CFG784F
5' end seq. 
>CFG784F.Seq
TGTACATCTAATAAATTTCTGAAGATGTGGGTAAAGCAATTAATNTAAAATTAAATGAAA
ATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAATCAAGTTATTG
AAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAAACATGATTCAT
TAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTAC
CAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGGCCAAAATAATA
ATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACAATTCCAAAGTA
TAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACTGGTGGTACCTGGTGAT
AGTGATTCAAAGACCACCAATGAGGCAATTATCTTTTCATCAAAGGTATCAACTACTGAC
CGTC----------
Length of 5' end seq. 484
3' end seq. ID CFG784Z
3' end seq. 
>CFG784Z.Seq
----------GGTACCACTGGTGATACATTGGCTCAATACATTCGCTGGTACAGATTCAG
TCGGGTGTANCTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAA
TTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAAT
GAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCA
ATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAAT
ACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGGA
GATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAA
GATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTA
CAAGAAGATCAAGAACAATATGAACNT
Length of 3' end seq. 497
Connected seq. ID CFG784P
Connected seq. 
>CFG784P.Seq
TGTACATCTAATAAATTTCTGAAGATGTGGGTAAAGCAATTAATNTAAAATTAAATGAAA
ATATTGAAAAAGTTGAAGATGTAGTTGTACAATTTGAGAATGTTGCAAATCAAGTTATTG
AAGAATTAAAAGTTGAACATCAAAGACAAGAATTATTAGGTGAAGTAAAACATGATTCAT
TAAGAGACTCTGCAACAAATTACATTTGGGGATTACTTGATAAAATTCAAAGTTATTTAC
CAAAAGACAACAATAAAGTTTCAAAAGTTGAAGAAGCATTTTCAAGTGGCCAAAATAATA
ATATCGGTAGCAGTATTGGTGATTCAACTGGTGCTAGTACTTCCCCACAATTCCAAAGTA
TAAATGGTTTATCCGGAGCTTCACAATCTAGTGGTAGTTCAACTGGTGGTACCTGGTGAT
AGTGATTCAAAGACCACCAATGAGGCAATTATCTTTTCATCAAAGGTATCAACTACTGAC
CGTC----------GGTACCACTGGTGATACATTGGCTCAATACATTCGCTGGTACAGAT
TCAGTCGGGTGTANCTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGG
TAAATTTAACTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGA
TAATGAAGAAATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACC
TGCAATCTATCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCG
TAATACTCTTAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCA
AGGAGATAAAGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCA
ACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAA
TTTACAAGAAGATCAAGAACAATATGAACNT
Length of connected seq. 981
Full length Seq ID -
Full length Seq. -
Length of full length seq. -