>CFG782 (CFG782Q) /CSM/CF/CFG7-D/CFG782Q.Seq.d/
ATTTTTTTATTTTAAACAAAGAGTGGATATTTTCTAAAAAAAATAAAAATAAAAATGGAA
ATGGAAGGATTTGATCATGTTACATTTTGGGTTGGTAATGCATTACAAGCAGCAACTTAT
TACATTGCTAGATTTGGATTTCAAAATTTAGCTTATAGTGGTTTAGAAACTGGTAATCGT
CAATTCGCCACTCATGTTATCCATCAAAACAACATTATTATGGCTTTTACATCACCATTA
ACTGGTGACAACAAAGATTATGCAGACCACATGATGAGACATGGTGATGGTGTCAAAGAT
ATTGCTTTCAACGTTAAAGATGTACAACACATTTATGATGAAGCAGTTAAAGCAGGAGCT
CAATCAGTTAAAGAACCACATCAAATTAAAGACGAACATGGTATTGTTACATTAGCAACT
ATCATGAGTCCATATGGTGAAACTACACATACTTTTGTTGATAGATCTCAATATAAAGGT
GCATTCTTACCAGGTTTCACATACAAGGTCGCTTCAGATCCATTATCAAATATCACCGAA
XXXXXXXXXXTAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTC
GTTCAATGGTACGAAAAAGGTTTTACCAATTCCCACCGTTTCTGGTCAGTTGATGACAAA
ACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAA
GTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATAC
GTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATT
GATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATAC
TATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGAC
ACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATC
TTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAAC
CATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAA
GAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATAACTAAAT
AACATTACAATATATCAAAATAAAAATAA

iflf*TKSGYFLKKIKIKMEMEGFDHVTFWVGNALQAATYYIARFGFQNLAYSGLETGNR
QFATHVIHQNNIIMAFTSPLTGDNKDYADHMMRHGDGVKDIAFNVKDVQHIYDEAVKAGA
QSVKEPHQIKDEHGIVTLATIMSPYGETTHTFVDRSQYKGAFLPGFTYKVASDPLSNITE
---

---IDHVVSNHADKMMEPVVQWYEKGFTNSHRFWSVDDKTIHTEYSSLRSVVVADKSEKV
KLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYY
TSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNH
DGFGAGNFKSLFEAIERQQETRGNL*vclnykcsll*lnnitiyqnkn

Frame A:
iflf*TKSGYFLKKIKIKMEMEGFDHVTFWVGNALQAATYYIARFGFQNLAYSGLETGNR
QFATHVIHQNNIIMAFTSPLTGDNKDYADHMMRHGDGVKDIAFNVKDVQHIYDEAVKAGA
QSVKEPHQIKDEHGIVTLATIMSPYGETTHTFVDRSQYKGAFLPGFTYKVASDPLSNITE
---

---**imsfqimqik*wnqsfngtkkvlpiptvsgqlmtkpfipnihh*dqs*llislkk
lnyqlmnqpmvlervkfknt*istmvlvfnisp*rlitslmlsqn*dlvvslsslfqkht
ihhsernyntlh*klkkiwtl*rnytf*simmtkvifykslqimlkinqlfslklskett
mmvsvlvtlnpslkqskdnkklvetyrcvsitnvlyyn*itlqyikiki

Frame B:
ffyfkqrvdif*kk*k*kwkwkdlimlhfglvmhykqqlitlldldfki*livv*klviv
nsplmlsikttllwllhhh*lvttkimqtt**dmvmvskillstlkmyntfmmkqlkqel
nqlknhiklktnmvllh*qls*vhmvklhilllidlnikvhsyqvshtrslqihyqisp-
--

---nrscrfkscr*ndgtsrsmvrkrfyqfppflvs**qnhsyrifiikisrsc**v*ks
*itn**tsqwy*kesnsrirrflqwcwcstyrlkd**hh*cylkikiswclfphcsknil
yitqreittlfirn*rrfghfreithfnrl**qrlsftnlyk*c*r*tncfl*nypkkqp
*wfrcw*l*ipl*snrkttrnswkligvsqlqmffiitk*hynisk*k*

Frame C:
ffilnkewifskknknkngngri*scyilgw*citssnllhc*iwiskfsl*wfrnw*ss
irhscypskqhyygfyitinw*qqrlcrphdetw*wcqrycfqr*rctthl**ss*srss
is*rttsn*rrtwycyisnyhesiw*nytyfc**isi*rciltrfhiqgrfrsiikyhr-
--

---IDHVVSNHADKMMEPVVQWYEKGFTNSHRFWSVDDKTIHTEYSSLRSVVVADKSEKV
KLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKLRSRGVSFLTVPKTYY
TSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVEDKPTVFFEIIQRNNH
DGFGAGNFKSLFEAIERQQETRGNL*vclnykcsll*lnnitiyqnkn

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG782 (CFG782Q) /CSM/CF/CFG7-D/CFG782Q.Seq.d/                       2268   0.0
VFO488 (VFO488Q) /CSM/VF/VFO4-D/VFO488Q.Seq.d/                       1298   0.0
VFA816 (VFA816Q) /CSM/VF/VFA8-A/VFA816Q.Seq.d/                       1298   0.0
SFC722 (SFC722Q) /CSM/SF/SFC7-A/SFC722Q.Seq.d/                       1298   0.0
CFG395 (CFG395Q) /CSM/CF/CFG3-D/CFG395Q.Seq.d/                       1298   0.0
CFB319 (CFB319Q) /CSM/CF/CFB3-A/CFB319Q.Seq.d/                       1298   0.0
AFJ180 (AFJ180Q) /CSM/AF/AFJ1-D/AFJ180Q.Seq.d/                       1291   0.0
VFK407 (VFK407Q) /CSM/VF/VFK4-A/VFK407Q.Seq.d/                       1289   0.0
CFI440 (CFI440Q) /CSM/CF/CFI4-B/CFI440Q.Seq.d/                       1287   0.0
VFL704 (VFL704Q) /CSM/VF/VFL7-A/VFL704Q.Seq.d/                       1285   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***.  1110   0.0    5
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.  1110   0.0    15
BI322343|BI322343.1 kx19h02.y3 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence.    42   3e-09  4
BI502176|BI502176.1 kt86c08.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:HPPD_CAEEL Q22633 4-HYDROXYPHENYLPYRUVATE DIOXYGENASE ;, mRNA sequence.    36   9e-09  5
L38493|L38493.1 Coccidioides immitis T-cell reactive protein (trcP) gene exons 1-4, complete cds.    46   3e-06  3
BM395514|BM395514.1 50072-2-9-E12.r.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    64   5e-06  1
M59429|M59429.1 T. thermophila F-antigen (tfa) gene, complete cds.    46   3e-05  5
AC009650|AC009650.3 Homo sapiens chromosome 11 clone RP11-360I13 map 11, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36   6e-05  10
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   3e-04  17
AX417724|AX417724.1 Sequence 15 from Patent WO0231173.             44   0.002  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   713   0.0
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   426   e-117
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat...   424   e-117
BC153801_1(BC153801|pid:none) Xenopus laevis hypothetical protei...   415   e-114
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   414   e-114
(Q5EA20) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   409   e-112
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   407   e-112
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   404   e-111
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   404   e-111
AK149416_1(AK149416|pid:none) Mus musculus adult male liver tumo...   403   e-111

 psg: 0.64  gvh: 0.43  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal

>> prediction for CFG782 is nuc

>CFG782F.Seq
ATTTTTTTATTTTAAACAAAGAGTGGATATTTTCTAAAAAAAATAAAAATAAAAATGGAA
ATGGAAGGATTTGATCATGTTACATTTTGGGTTGGTAATGCATTACAAGCAGCAACTTAT
TACATTGCTAGATTTGGATTTCAAAATTTAGCTTATAGTGGTTTAGAAACTGGTAATCGT
CAATTCGCCACTCATGTTATCCATCAAAACAACATTATTATGGCTTTTACATCACCATTA
ACTGGTGACAACAAAGATTATGCAGACCACATGATGAGACATGGTGATGGTGTCAAAGAT
ATTGCTTTCAACGTTAAAGATGTACAACACATTTATGATGAAGCAGTTAAAGCAGGAGCT
CAATCAGTTAAAGAACCACATCAAATTAAAGACGAACATGGTATTGTTACATTAGCAACT
ATCATGAGTCCATATGGTGAAACTACACATACTTTTGTTGATAGATCTCAATATAAAGGT
GCATTCTTACCAGGTTTCACATACAAGGTCGCTTCAGATCCATTATCAAATATCACCGAA
----------

>CFG782Z.Seq
----------TAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTC
GTTCAATGGTACGAAAAAGGTTTTACCAATTCCCACCGTTTCTGGTCAGTTGATGACAAA
ACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAA
GTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATAC
GTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATT
GATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATAC
TATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGAC
ACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATC
TTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAAC
CATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAA
GAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATAACTAAAT
AACATTACAATATATCAAAATAAAAATAA

>CFG782P.Seq
ATTTTTTTATTTTAAACAAAGAGTGGATATTTTCTAAAAAAAATAAAAATAAAAATGGAA
ATGGAAGGATTTGATCATGTTACATTTTGGGTTGGTAATGCATTACAAGCAGCAACTTAT
TACATTGCTAGATTTGGATTTCAAAATTTAGCTTATAGTGGTTTAGAAACTGGTAATCGT
CAATTCGCCACTCATGTTATCCATCAAAACAACATTATTATGGCTTTTACATCACCATTA
ACTGGTGACAACAAAGATTATGCAGACCACATGATGAGACATGGTGATGGTGTCAAAGAT
ATTGCTTTCAACGTTAAAGATGTACAACACATTTATGATGAAGCAGTTAAAGCAGGAGCT
CAATCAGTTAAAGAACCACATCAAATTAAAGACGAACATGGTATTGTTACATTAGCAACT
ATCATGAGTCCATATGGTGAAACTACACATACTTTTGTTGATAGATCTCAATATAAAGGT
GCATTCTTACCAGGTTTCACATACAAGGTCGCTTCAGATCCATTATCAAATATCACCGAA
----------TAATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTC
GTTCAATGGTACGAAAAAGGTTTTACCAATTCCCACCGTTTCTGGTCAGTTGATGACAAA
ACCATTCATACCGAATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAA
GTTAAATTACCAATTAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATAC
GTAGATTTCTACAATGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATT
GATGCTATCTCAAAATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATAC
TATACATCACTCAGAGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGAC
ACTTTAGAGAAATTACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATC
TTTACAAATAATGTTGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAAC
CATGATGGTTTCGGTGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAA
GAAACTCGTGGAAACTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATAACTAAAT
AACATTACAATATATCAAAATAAAAATAA