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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG770
Library CF
(Link to library)
Clone ID CFG770
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFG770P
(Link to Original site)
Representative DNA sequence 
>CFG770 (CFG770Q) /CSM/CF/CFG7-C/CFG770Q.Seq.d/
ACAAAAAACATTTTCTAATAAAACAGATAAATNAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGXXXXXXXXXXGTAAGACCAT
CCTCGAATTAGGTGGTANCAATGCCATCGTTGTTGCTGAAGATGCTGATATTGAACTCGT
TCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAACGTTGTACCACTTGTAG
ACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTGGAACGTTTAACCAAAGCCTA
CAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACAC
CCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAA
GGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGT
CGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTA
CATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGG
TCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTAC
CGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGG
TGCCTTTGGAGGTAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCNGAAAC
AGTATTGCCGTCGAGACNATACAATCAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KKHFLIKQINXKMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMIC---

---KTILELGGXNAIVVAEDADIELVLRAVLFASVGTTGQRCTTCRRLFVHESLYDTILE
RLTKAYKTIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGN
FVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIF
KWLGPTGSDCGIVNVNVATNGAEIGGAFGGKKRPEVVENLAQTAETVLPSRXYNQ
Translated Amino Acid sequence (All Frames) 
Frame A:
tknif**nr*xkk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllq
llevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvk
ftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishv
pylvgmlqsq*fa---

---vrpssn*vvxmpslllkmlilnsfsvpfsllllvpldnvvplvdvysftnhcmtpfw
nv*pkptkplksvihlkkvf**vhstpkallknslkvlkk*kskvvrsslvvinsisvve
tllnqpslplnmmlqs*rlnslfqfst**nskiltmllpgimkshkvshlpssqtikris
sngldlpdltvv*lt*m*lqtvlklvvplevkrdrrw*riwlrqxkqycrrdxtin

Frame B:
qktfsnktdkxkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlndlr---

---*dhprirwxqchrcc*rc*y*trspcrslcfcwyhwttlyhl*tfirsriiv*hhfg
tfnqslqnh*nr*st*rrcfsrstphpkrc*rih*rs*rnkkarw*grhww**tryqwwk
lc*tnrrch*t*csnrkd*tlcsnslhneiqks*rcfcle**sptrslifplhkqskeyl
qmawtyri*lwys*rkcsykrc*nwwclwr*ketgggresgsdsxnsiavetiqs

Frame C:
KKHFLIKQINXKMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMIC---

---KTILELGGXNAIVVAEDADIELVLRAVLFASVGTTGQRCTTCRRLFVHESLYDTILE
RLTKAYKTIKIGNPLEEGVLVGPLHTQSAVKEFTEGLEEIKKQGGKVVIGGNKLDISGGN
FVEPTVVAIEHDAPIVKTELFVPILYIMKFKNLDDAFAWNNEVPQGLSSSLFTNNQKNIF
KWLGPTGSDCGIVNVNVATNGAEIGGAFGGKKRPEVVENLAQTAETVLPSRXYNQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG770 (CFG770Q) /CSM/CF/CFG7-C/CFG770Q.Seq.d/                       2472   0.0
CFB119 (CFB119Q) /CSM/CF/CFB1-A/CFB119Q.Seq.d/                       1344   0.0
VFH586 (VFH586Q) /CSM/VF/VFH5-D/VFH586Q.Seq.d/                       1314   0.0
SFE588 (SFE588Q) /CSM/SF/SFE5-D/SFE588Q.Seq.d/                       1314   0.0
CHB718 (CHB718Q) /CSM/CH/CHB7-A/CHB718Q.Seq.d/                       1312   0.0
CFK478 (CFK478Q) /CSM/CF/CFK4-D/CFK478Q.Seq.d/                       1306   0.0
SFC881 (SFC881Q) /CSM/SF/SFC8-D/SFC881Q.Seq.d/                       1292   0.0
SFJ536 (SFJ536Q) /CSM/SF/SFJ5-B/SFJ536Q.Seq.d/                       1291   0.0
CFH859 (CFH859Q) /CSM/CF/CFH8-C/CFH859Q.Seq.d/                       1291   0.0
SFK619 (SFK619Q) /CSM/SF/SFK6-A/SFK619Q.Seq.d/                       1287   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.  1231   0.0    5
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   2e-16  2
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   8e-12  2
AF333116|AF333116.1 Sterkiella histriomuscorum turgor-like protein gene, partial cds.    38   2e-11  6
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   1e-09  4
BU111535|BU111535.1 603126401F1 CSEQCHL13 Gallus gallus cDNA clone ChEST96a2 5', mRNA sequence.    42   7e-08  4
BU488446|BU488446.1 604125245F1 CSEQRBN36 Gallus gallus cDNA clone ChEST943i12 5', mRNA sequence.    42   1e-07  4
BU319046|BU319046.1 603486759F1 CSEQCHN62 Gallus gallus cDNA clone ChEST382f16 5', mRNA sequence.    42   1e-07  4
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    62   1e-07  2
BU406760|BU406760.1 604140323F1 CSEQCHN59 Gallus gallus cDNA clone ChEST972m5 5', mRNA sequence.    42   1e-07  4
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   371   e-101
(Q41247) RecName: Full=Aldehyde dehydrogenase family 7 member A1...   232   7e-61
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   225   3e-59
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   231   5e-59
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   229   2e-58
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   225   6e-58
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   222   7e-58
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   221   7e-58
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   221   1e-57
BC081104_1(BC081104|pid:none) Xenopus laevis MGC83352 protein, m...   218   4e-57
protein update 2009. 5.14
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.29  top: 0.57  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for CFG770 is nuc
5' end seq. ID CFG770F
5' end seq. 
>CFG770F.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATNAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGG----------
Length of 5' end seq. 580
3' end seq. ID CFG770Z
3' end seq. 
>CFG770Z.Seq
----------GTAAGACCATCCTCGAATTAGGTGGTANCAATGCCATCGTTGTTGCTGAA
GATGCTGATATTGAACTCGTTCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGA
CAACGTTGTACCACTTGTAGACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTG
GAACGTTTAACCAAAGCCTACAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTT
TTAGTAGGTCCACTCCACACCCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAA
ATAAAAAAGCAAGGTGGTAAGGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGA
AACTTTGTTGAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAA
CTCTTTGTTCCAATTCTCTACATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGG
AATAATGAAGTCCCACAAGGTCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATC
TTCAAATGGCTTGGACCTACCGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACA
AACGGTGCTGAAATTGGTGGTGCCTTTGGAGGTAAAAAGAGACCGGAGGTGGTAGAGAAT
CTGGCTCAGACAGCNGAAACAGTATTGCCGTCGAGACNATACAATCAAC
Length of 3' end seq. 699
Connected seq. ID CFG770P
Connected seq. 
>CFG770P.Seq
ACAAAAAACATTTTCTAATAAAACAGATAAATNAAAAAATGACTACCTTTAACGAATATC
CATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAAT
GGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAA
CTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAA
AAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTC
AAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAA
TTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTG
GTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAA
TGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTG
CCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGG----------GTAAGACCAT
CCTCGAATTAGGTGGTANCAATGCCATCGTTGTTGCTGAAGATGCTGATATTGAACTCGT
TCTCCGTGCCGTTCTCTTTGCTTCTGTTGGTACCACTGGACAACGTTGTACCACTTGTAG
ACGTTTATTCGTTCACGAATCATTGTATGACACCATTTTGGAACGTTTAACCAAAGCCTA
CAAAACCATTAAAATCGGTAATCCACTTGAAGAAGGTGTTTTAGTAGGTCCACTCCACAC
CCAAAGCGCTGTTAAAGAATTCACTGAAGGTCTTGAAGAAATAAAAAAGCAAGGTGGTAA
GGTCGTCATTGGTGGTAATAAACTCGATATCAGTGGTGGAAACTTTGTTGAACCAACCGT
CGTTGCCATTGAACATGATGCTCCAATCGTAAAGACTGAACTCTTTGTTCCAATTCTCTA
CATAATGAAATTCAAAAATCTTGACGATGCTTTTGCCTGGAATAATGAAGTCCCACAAGG
TCTCTCATCTTCCCTCTTCACAAACAATCAAAAGAATATCTTCAAATGGCTTGGACCTAC
CGGATCTGACTGTGGTATAGTTAACGTAAATGTAGCTACAAACGGTGCTGAAATTGGTGG
TGCCTTTGGAGGTAAAAAGAGACCGGAGGTGGTAGAGAATCTGGCTCAGACAGCNGAAAC
AGTATTGCCGTCGAGACNATACAATCAAC
Length of connected seq. 1279
Full length Seq ID -
Full length Seq. -
Length of full length seq. -