AFE690
Library AF
(Link to library)
Clone ID AFE690
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID AFE690P
(Link to Original site)
Representative DNA sequence
>AFE690 (AFE690Q) /CSM/AF/AFE6-D/AFE690Q.Seq.d/
AAATTNATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNNTTTTTTGAAAAAAAAAAX
XXXXXXXXXTATAACATTTNAAGTGAAGGTAGTGACAACCTTNANAATGTAAANCAAGAT
TCAAGATAANGAAGGTTTCCCCCAGATCAACAACGTNTCATTTCGCTGGTAANCAATTAG
AAGATGNTCGNACTCTCTCTGATTCCAATATCCAAAAAGAATCAGCTCTCCACTTGGTCC
TCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTC
TTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAG
GTATCCCANCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTA
CTCTCTCTGGTTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAG
GTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAG
GTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAG
ATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATT
ACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAA
TTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACA
TTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTCCA
sequence update 2001. 6. 2
Translated Amino Acid sequence
nxfllyky*ihilffyil*HFIKKKKKKKXKKSXFLKKK---

---YNIXSEGSDNLXNVXQDSR*xrfppdqqrxislvxn*kmxxlslipiskknqlstws
sd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvsxqtnkd*fslvnn*kmvv
lslvttfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhq
innvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvtt
lrm*kqkfktkkvf


Translated Amino Acid sequence (All Frames)
Frame A:
kxifiiqilnsyfiflyivtfhkkkkkkkx*kixffekk---

---YNIXSEGSDNLXNVXQDSR*xrfppdqqrxislvxn*kmxxlslipiskknqlstws
sd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvsxqtnkd*fslvnn*kmvv
lslvttfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrmlkpksktkkvfhq
innvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvtt
lrm*kqkfktkkvf

Frame B:
nxfllyky*ihilffyil*HFIKKKKKKKXKKSXFLKKK---

---itfxvkvvttxxm*xkiqdxegfpqinnvsfrw*xirrxsxsl*fqypkrissplgp
qikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrrypxrptkinfrw*tirrwsy
slwlqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec*sqnprqrrystr
sttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh
*ecknknsrqrrys

Frame C:
ixfyytnikfifyffiycnis*kkkkkkxlknxxf*kkk---

---*hxk*r**qpxxckxrfkixkvsprsttxhfagxqledxrtlsdsniqkesalhlvl
rlrggmqifvktltgktitlevegsdnienvktkiqdkegipxdqqrlifagkqledgrt
lsgyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippd
qqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdni
envktkiqdkegip

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFE690 (AFE690Q) /CSM/AF/AFE6-D/AFE690Q.Seq.d/ 1437 0.0
CFJ515 (CFJ515Q) /CSM/CF/CFJ5-A/CFJ515Q.Seq.d/ 1350 0.0
CFJ754 (CFJ754Q) /CSM/CF/CFJ7-C/CFJ754Q.Seq.d/ 1346 0.0
CFF682 (CFF682Q) /CSM/CF/CFF6-D/CFF682Q.Seq.d/ 1344 0.0
AFE114 (AFE114Q) /CSM/AF/AFE1-A/AFE114Q.Seq.d/ 1338 0.0
CFK113 (CFK113Q) /CSM/CF/CFK1-A/CFK113Q.Seq.d/ 1336 0.0
AFJ484 (AFJ484Q) /CSM/AF/AFJ4-D/AFJ484Q.Seq.d/ 1336 0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/ 1330 0.0
CHD734 (CHD734Q) /CSM/CH/CHD7-B/CHD734Q.Seq.d/ 1330 0.0
CFH562 (CFH562Q) /CSM/CF/CFH5-C/CFH562Q.Seq.d/ 1330 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds. 1253 0.0 4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19. 1237 0.0 4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C. 1237 0.0 4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14. 730 0.0 4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2. 666 0.0 5
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds. 650 0.0 3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18. 581 e-166 3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17. 581 e-166 3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin. 159 5e-95 6
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read. 163 2e-94 5
dna update 2003. 8.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict... 416 e-115
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge... 416 e-115
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty... 416 e-115
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ... 412 e-114
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu... 400 e-110
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq... 398 e-109
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar... 398 e-109
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu... 398 e-109
S32020(S32020) polyubiquitin 6 - Geodia cydonium &X70917_1(X709... 398 e-109
T16144(T16144) ubiquitin - Caenorhabditis elegans &U23172_1(U23... 398 e-109
protein update 2009. 4.19
PSORT

psg: 0.55 gvh: 0.23 alm: 0.74 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.60 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

84.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: cytoplasmic

>> prediction for AFE690 is nuc

5' end seq. ID AFE690F
5' end seq.
>AFE690F.Seq
AAATTNATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNNTTTTTTGAAAAAAAAAA-
---------
Length of 5' end seq. 119
3' end seq. ID AFE690Z
3' end seq.
>AFE690Z.Seq
----------TATAACATTTNAAGTGAAGGTAGTGACAACCTTNANAATGTAAANCAAGA
TTCAAGATAANGAAGGTTTCCCCCAGATCAACAACGTNTCATTTCGCTGGTAANCAATTA
GAAGATGNTCGNACTCTCTCTGATTCCAATATCCAAAAAGAATCAGCTCTCCACTTGGTC
CTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACT
CTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAA
GGTATCCCANCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGT
ACTCTCTCTGGTTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGA
GGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAA
GGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCA
GATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGAT
TACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAA
ATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAAC
ATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTCCA
Length of 3' end seq. 755
Connected seq. ID AFE690P
Connected seq.
>AFE690P.Seq
AAATTNATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAATCNNNTTTTTTGAAAAAAAAAA-
---------TATAACATTTNAAGTGAAGGTAGTGACAACCTTNANAATGTAAANCAAGAT
TCAAGATAANGAAGGTTTCCCCCAGATCAACAACGTNTCATTTCGCTGGTAANCAATTAG
AAGATGNTCGNACTCTCTCTGATTCCAATATCCAAAAAGAATCAGCTCTCCACTTGGTCC
TCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTC
TTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAG
GTATCCCANCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTA
CTCTCTCTGGTTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAG
GTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAG
GTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAG
ATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATT
ACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAA
TTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACA
TTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATTCCA
Length of connected seq. 874
Full length Seq ID -
Full length Seq. -
Length of full length seq. -