CFG717 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFG717
Library	CF (Link to library)
Clone ID	CFG717 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14176-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFG7-A/CFG717Q.Seq.d/
Representative seq. ID	CFG717E (Link to Original site)
Representative DNA sequence	>CFG717 (CFG717Q) /CSM/CF/CFG7-A/CFG717Q.Seq.d/ AAAAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAA ATCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATAT AAAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACT AAAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAAT GACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAA ACAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTT ACACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAAT CTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATT GTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCA ATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT GAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCA AATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTT GTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCA AGTGATATGATCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACA GTTTCACCAATCGTNAATAAAGTTTCAAGTTTTGGTNCTTTTATTAAACNNGAAGNNCAA CAAATTC
sequence update	2001. 6. 9
Translated Amino Acid sequence	kktqnnthlhniftilnyiirqqqqqqqpilYTYKYKIMNPDFTVYVSNISLKANT KTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQF TPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVAS IIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAV VERANALDERFQISGFFKSASDMISXQASNLMKAAEENSTVSPIVNKVSSFGXFIKXEXQ QI
Translated Amino Acid sequence (All Frames)	Frame A: kktqnnthlhniftilnyiirqqqqqqqpilYTYKYKIMNPDFTVYVSNISLKANT KTVSDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQF TPELEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKTSVVAS IIAAGYSVGQDAAIKARQVDEEHMISLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAV VERANALDERFQISGFFKSASDMISXQASNLMKAAEENSTVSPIVNKVSSFGXFIKXEXQ QI Frame B: kklktthtytiyllfiisksdnnnnnnnnnpffnihinikiqisqfmfqifhkqil kqfqifshfveelliyfemtqlvvhnkqylnqiqlqkqlyyqmhlikfklfnl hqnslihnnflnnnnliisvvnnnhnnnnmlvnhkktlienivcqimkevkplllhq llqqvivldktlplkhvklmknifhnlklelklskqkqmkliitftflrvplplrvql reqmhsmkdsksqvslrvqvislxklpi*kqpkkivqfhqsxikfqvlvlllnxkxn kf Frame C: knskqhtltqyiyyfklylnptttititttthsliyiinnesrfhslcfkyfiesky nsfrfflilwkncfifkkpnwfttsnssiirfscknsfiinkcincrsnsscsiy trirvfnttifsttti*sqwttttttticsttrrhckrtcarkknlcccin ycsrlcwtrrchstss*rtydfiktswsscqskskn**pshfecrchgcsc reskctrkipnlrfleckydlsxsfqfnessrrkysftnrxsfkfwxfy*txxxt n
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/ 852 0.0 VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/ 852 0.0 VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/ 852 0.0 VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/ 852 0.0 VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/ 852 0.0 VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/ 852 0.0 VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/ 852 0.0 VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/ 852 0.0 VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/ 852 0.0 CHB569 (CHB569Q) /CSM/CH/CHB5-C/CHB569Q.Seq.d/ 852 0.0
own update	2002. 9.26
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AE014829\|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence. 46 4e-08 11 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 40 1e-06 18 AE014836\|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence. 32 8e-05 16 AL929355\|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5. 38 2e-04 13 AE014820\|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 2e-04 11 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 42 3e-04 15 AE014830\|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 40 6e-04 12 AL929353\|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4. 34 7e-04 14 AC005139\|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 38 7e-04 12 AE014838\|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence. 38 8e-04 14
dna update	2003.12.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC090882_24(AC090882\|pid:none) Oryza sativa chromosome 3 BAC OSJ... 64 5e-09 BT068289_1(BT068289\|pid:none) Zea mays full-length cDNA clone ZM... 64 7e-09 AC091811_13(AC091811\|pid:none) Oryza sativa chromosome 3 BAC OSJ... 64 7e-09 BT061154_1(BT061154\|pid:none) Zea mays full-length cDNA clone ZM... 64 7e-09 CR855144_15(CR855144\|pid:none) Oryza sativa (indica cultivar-gro... 64 9e-09 EU958085_1(EU958085\|pid:none) Zea mays clone 1672545 RNA-binding... 63 1e-08 AY087960_1(AY087960\|pid:none) Arabidopsis thaliana clone 39922 m... 62 2e-08 BT062058_1(BT062058\|pid:none) Zea mays full-length cDNA clone ZM... 62 3e-08 EU962087_1(EU962087\|pid:none) Zea mays clone 240116 RNA recognit... 62 3e-08 BT010766_1(BT010766\|pid:none) Arabidopsis thaliana At5g46870 gen... 61 6e-08
protein update	2009. 7. 1
PSORT	psg: 0.84 gvh: 0.45 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.08 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 20.0 %: mitochondrial 20.0 %: nuclear 8.0 %: endoplasmic reticulum 4.0 %: vesicles of secretory system >> prediction for CFG717 is cyt
5' end seq. ID	CFG717F
5' end seq.	>CFG717F.Seq AAAAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAA ATCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATAT AAAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACT AAAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAAT GACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAA ACAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTT ACACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAAT CTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATT GTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCA ATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT GAAGAACATATGATTTCATTAAAA----------
Length of 5' end seq.	624
3' end seq. ID	CFG717Z
3' end seq.	>CFG717Z.Seq ----------CAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAGAGAACATAG TGTGCCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGCAGCAGGTTA TAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGATTTC ATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAA CCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGC ACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCN NCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTNAA TAAAGTTTCAAGTTTTGGTNCTTTTATTAAACNNGAAGNNCAACAAATTC
Length of 3' end seq.	460
Connected seq. ID	CFG717P
Connected seq.	>CFG717P.Seq AAAAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAA ATCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATAT AAAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACT AAAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAAT GACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAA ACAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTT ACACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAAT CTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATT GTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCA ATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT GAAGAACATATGATTTCATTAAAA----------CAACAATATGTTAGTCAACCACAAGA AGACATTGTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAANCCTCTGTTGT TGCATCAATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCA AGTTGATGAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGC AAAAGCAAATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGG TGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAA GAGTGCAAGTGATATGATCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAA TAGTACAGTTTCACCAATCGTNAATAAAGTTTCAAGTTTTGGTNCTTTTATTAAACNNGA AGNNCAACAAATTC
Length of connected seq.	1084
Full length Seq ID	CFG717E
Full length Seq.	>CFG717E.Seq AAAAAAACTCAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAA ATCCGACAACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATAT AAAATAATGAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACT AAAACAGTTTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAAT GACCCAACTGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAA ACAGCTTTATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTT ACACCAGAATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAAT CTCAGTGGTGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATT GTAAATAGAGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCA ATTATTGCAGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGAT GAAGAACATATGATTTCATTAAAACTTAAAGTTGGAGCTGAAGCTGTCAAAGCAAAAGCA AATGAAATTGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTT GTAGAGAGAGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCA AGTGATATGATCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACA GTTTCACCAATCGTNAATAAAGTTTCAAGTTTTGGTNCTTTTATTAAACNNGAAGNNCAA CAAATTC
Length of full length seq.	907

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas