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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG664
Library CF
(Link to library)
Clone ID CFG664
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFG664P
(Link to Original site)
Representative DNA sequence 
>CFG664 (CFG664Q) /CSM/CF/CFG6-C/CFG664Q.Seq.d/
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAANGAAAAAAAAAANTTAAAAAANCNNCTTATTTGAAAAAAAAAAXX
XXXXXXXXAAAAANANTCGGCTCTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCAAAT
CTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGGCTCAGATAATN
TTTGNAAAAATGTAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGA
TTAATNTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACNTACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCNNAGTTGAAGGTTCATGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCCAGATCATCAACGTCTCANTTTC
GCCGGTAANCAATTGGAGGANGGTCGTACTCTCTNCTGATTACANCATTCNAAAGGAATC
CACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCNAATTTTTGTAAAAACTCTCAC
TGGTAAAACCATAACACNGGAAGNNGCAGGNAGTGACAGACNTTNAGNATGTAGGTCGTA
AGATTCTNGACNNAGAAGGCNTCCCCNCTGANCNNCAACGTCTCATNNTCGCCGGTANNC
ANTTCNANGAGGGTNGTACTCTTTCGNATCACNACATNCAANAGGAACCANCACNCCATT
AAGGTCTCAGATT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kffllyky*ihilffyil*HFIKKKXKKKXKKXXYLKKK---

---KXSALHLVXRLRGGMQIFVKTLTGKTITLEVEGLR*xlxkckqrfktkkvshqtnkd
*xslvnn*kmvvlslityiqkestlhlvlrlrggmqifvktltgktitlxvegs**h*ec
*sqnprqrrystqiinvsxspvxnwrxvvlsxdyxixkestlhlvlrlrggmxifvktlt
gktitxexagsdrxxxcrs*dsxxrrxpx*xxtshxrrxxxxxgxysfxsxhxxgtxtpl
rsqi
Translated Amino Acid sequence (All Frames) 
Frame A:
kffllyky*ihilffyil*HFIKKKXKKKXKKXXYLKKK---

---kxxrlstwssd*evvckslskh*lvrpsllklrgsdnxxknvnkdsrqrryptrptk
inxrw*tirrwsysl*lxtfkrnplsi*ssd*evvckflskpslvrllhsxlkvhdnien
vkakiqdkegipprsstsxfrr*xiggxsysllitxfxrnplsi*fsd*evvcxfl*kls
lvkp*hxkxqxvtdxxxvgrkildxegxpxxxqrlxxagxxfxegxtlsxhxxqxepxxh
*glr

Frame B:
nsfyytnikfifyffiycnis*kkxekkxlkxxli*kkk---

---kxxgsplgxqikrwyanlcqninw*dhhs*s*gaqixfxkm*tkiqdkegippdqqr
lxfagkqledgrtlsdyxhskgihspfspqikrwyanfcqnphw*dyytxs*rfmitlrm
lkpksktkkvfhpdhqrlxfagxqlexgrtlx*lxhskgihspfssqikrwyanfcknsh
w*nhntgxxrx*qtxxm*vvrfxtxkasplxxnvsxspvxxsxrvvlfrittxxrnxhxi
kvsd

Frame C:
ilfiiqilnsyfiflyivtfhkkkxkkkx*kxxlfekk---

---KXSALHLVXRLRGGMQIFVKTLTGKTITLEVEGLR*xlxkckqrfktkkvshqtnkd
*xslvnn*kmvvlslityiqkestlhlvlrlrggmqifvktltgktitlxvegs**h*ec
*sqnprqrrystqiinvsxspvxnwrxvvlsxdyxixkestlhlvlrlrggmxifvktlt
gktitxexagsdrxxxcrs*dsxxrrxpx*xxtshxrrxxxxxgxysfxsxhxxgtxtpl
rsqi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG664 (CFG664Q) /CSM/CF/CFG6-C/CFG664Q.Seq.d/                       1170   0.0
CFB792 (CFB792Q) /CSM/CF/CFB7-D/CFB792Q.Seq.d/                        856   0.0
SFC862 (SFC862Q) /CSM/SF/SFC8-C/SFC862Q.Seq.d/                        835   0.0
VFN482 (VFN482Q) /CSM/VF/VFN4-D/VFN482Q.Seq.d/                        827   0.0
VFM296 (VFM296Q) /CSM/VF/VFM2-D/VFM296Q.Seq.d/                        815   0.0
SFB310 (SFB310Q) /CSM/SF/SFB3-A/SFB310Q.Seq.d/                        813   0.0
CHB634 (CHB634Q) /CSM/CH/CHB6-B/CHB634Q.Seq.d/                        807   0.0
CFB379 (CFB379Q) /CSM/CF/CFB3-D/CFB379Q.Seq.d/                        797   0.0
CFB430 (CFB430Q) /CSM/CF/CFB4-B/CFB430Q.Seq.d/                        795   0.0
CFI229 (CFI229Q) /CSM/CF/CFI2-B/CFI229Q.Seq.d/                        783   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   204   0.0    8
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   204   0.0    8
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   204   0.0    8
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   159   e-141  6
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   147   e-134  6
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   147   e-134  6
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   129   e-110  6
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   129   e-110  6
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   111   6e-66  5
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      119   2e-64  6
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF528678_1(AF528678|pid:none) Arabidopsis lyrata putative polyub...   147   2e-37
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   158   2e-37
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   158   2e-37
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   158   2e-37
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   156   9e-37
Z28649_1(Z28649|pid:none) Acetabularia cliftonii gene for polyub...   151   2e-35
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   150   4e-35
AB045758_1(AB045758|pid:none) Physarum polycephalum ppub4 mRNA f...   150   5e-35
AB045757_1(AB045757|pid:none) Physarum polycephalum ppub3 mRNA f...   150   5e-35
UQNC(S05323) polyubiquitin 4 - Neurospora crassa  &X13140_1(X131...   150   5e-35
protein update 2009. 5.14
PSORT 

 psg: 0.50  gvh: 0.47  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.00
 nuc: 0.43  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFG664 is nuc
5' end seq. ID CFG664F
5' end seq. 
>CFG664F.Seq
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAANGAAAAAAAAAANTTAAAAAANCNNCTTATTTGAAAAAAAAAA--
--------
Length of 5' end seq. 118
3' end seq. ID CFG664Z
3' end seq. 
>CFG664Z.Seq
----------AAAAANANTCGGCTCTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCAA
ATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGGCTCAGATAA
TNTTTGNAAAAATGTAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAA
GATTAATNTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACNTACATT
CAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTC
AAAACCCTCACTGGTAAGACTATTACACTCNNAGTTGAAGGTTCATGATAACATTGAGAA
TGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCCAGATCATCAACGTCTCANTT
TCGCCGGTAANCAATTGGAGGANGGTCGTACTCTCTNCTGATTACANCATTCNAAAGGAA
TCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCNAATTTTTGTAAAAACTCTC
ACTGGTAAAACCATAACACNGGAAGNNGCAGGNAGTGACAGACNTTNAGNATGTAGGTCG
TAAGATTCTNGACNNAGAAGGCNTCCCCNCTGANCNNCAACGTCTCATNNTCGCCGGTAN
NCANTTCNANGAGGGTNGTACTCTTTCGNATCACNACATNCAANAGGAACCANCACNCCA
TTAAGGTCTCAGATT
Length of 3' end seq. 725
Connected seq. ID CFG664P
Connected seq. 
>CFG664P.Seq
AAATTCTTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACAT
TTCATAAAAAAAAAANGAAAAAAAAAANTTAAAAAANCNNCTTATTTGAAAAAAAAAA--
--------AAAAANANTCGGCTCTCCACTTGGTCNTCAGATTAAGAGGTGGTATGCAAAT
CTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGGCTCAGATAATN
TTTGNAAAAATGTAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGA
TTAATNTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACNTACATTCA
AAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAA
AACCCTCACTGGTAAGACTATTACACTCNNAGTTGAAGGTTCATGATAACATTGAGAATG
TTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCCAGATCATCAACGTCTCANTTTC
GCCGGTAANCAATTGGAGGANGGTCGTACTCTCTNCTGATTACANCATTCNAAAGGAATC
CACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCNAATTTTTGTAAAAACTCTCAC
TGGTAAAACCATAACACNGGAAGNNGCAGGNAGTGACAGACNTTNAGNATGTAGGTCGTA
AGATTCTNGACNNAGAAGGCNTCCCCNCTGANCNNCAACGTCTCATNNTCGCCGGTANNC
ANTTCNANGAGGGTNGTACTCTTTCGNATCACNACATNCAANAGGAACCANCACNCCATT
AAGGTCTCAGATT
Length of connected seq. 843
Full length Seq ID -
Full length Seq. -
Length of full length seq. -