CFG652
Library CF
(Link to library)
Clone ID CFG652
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID CFG652Z
(Link to Original site)
Representative DNA sequence
>CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/
XXXXXXXXXXTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAA
CTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGA
AATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTA
TCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCT
TAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAA
AGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCT
TAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGA
AGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACC
ACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATAT
TCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAAC
TGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATT
GAAAATAATGTGAAGAATTTCCGATTTAAATGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---HIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQ
SMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLK
QEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQ
YQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQLKIM*risdlnd


Translated Amino Acid sequence (All Frames)
Frame A:
---si*lqrlli*llvvnltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsi
nq*nlki*ki*mmk*fvillrkckfnvkikilvnkikkiknn*liykienlvytkinkil
nkrkepinkn*simn*iykkiknnmnfy*insmmnnnnnhkkfqinnnfknnklihprif
nin*ii*inhskmtiimiklkn*kmmiiilminkltmvn*k*ceefpi*m


Frame B:
---pynykdf*fdcww*i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnls
inei*rskkfr**sns*ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*
treksqstrinql*ieftrrsrti*tfirstl**ttttttksfk*tttsrttn*ftrgys
isiksfkstipr*ls**sn*rikr**l*f**stn*qwsiennvknfrfk*


Frame C:
---HIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQ
SMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLK
QEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQINSPEDIQ
YQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQLKIM*risdlnd


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/ 900 0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 900 0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 900 0.0
CHC215 (CHC215Q) /CSM/CH/CHC2-A/CHC215Q.Seq.d/ 900 0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/ 900 0.0
CFG751 (CFG751Q) /CSM/CF/CFG7-C/CFG751Q.Seq.d/ 900 0.0
CFG652 (CFG652Q) /CSM/CF/CFG6-C/CFG652Q.Seq.d/ 900 0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 900 0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/ 900 0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/ 900 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds. 900 0.0 4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 36 7e-07 16
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 3e-06 19
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2. 32 3e-06 13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 36 4e-06 17
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 38 4e-05 15
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 7e-05 16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 36 9e-05 16
AE016747|AE016747.1 Staphylococcus epidermidis ATCC 12228, section 4 of 9 of the complete genome. 38 1e-04 11
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 40 1e-04 13
dna update 2004. 1.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 349 4e-95
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara... 50 8e-05
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 47 4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 47 7e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM... 46 0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 45 0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 45 0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 45 0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ... 45 0.002
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir... 45 0.003
protein update 2009. 5.14
PSORT

psg: 0.85 gvh: 0.32 alm: 0.57 top: 0.37 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: endoplasmic reticulum

>> prediction for CFG652 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFG652Z
3' end seq.
>CFG652Z.Seq
----------TTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAA
CTCTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGA
AATTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTA
TCAATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCT
TAAGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAA
AGAACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCT
TAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGA
AGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAACAACAACC
ACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAATTCACCCGAGGATAT
TCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTATCATAATGATCAAAC
TGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAATTAACAATGGTCAATT
GAAAATAATGTGAAGAATTTCCGATTTAAATGAT
Length of 3' end seq. 684
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -