CFG644
Library CF
(Link to library)
Clone ID CFG644
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03237-1
Original site URL
Representative seq. ID CFG644E
(Link to Original site)
Representative DNA sequence
>CFG644 (CFG644Q) /CSM/CF/CFG6-B/CFG644Q.Seq.d/
AAAACAAATGCAACAACAACAACAACAACAAGATATTGTAATAATGACGAATNATGCAAT
GATGAAAATTTGTGTACAAATGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAAA
TATTTCATGTGATGATGATAATGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATG
CTTTCATAAGAGGGTGGTATGTGATGATAATGATAAATGTACTGATAATATATGTAATCC
TGAGACTGGAACATGCTCATTTAGAAGAAGAATATGTACTGATAATAATGATTGCACAAT
GGACTGGTGTAATCAATTGACAGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGA
TTATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAG
AACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTAT
TCACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTGATTGTAA
ACTTGGCTGTATTCATAAAGAATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCA
ATGTTCCCATGAAGAAGGTATAACTCACACTCCAATTTCCTGTGATGATAACAATGATTG
TACAACTGATAGTTGTGATATTTCAATTGGTTGTATACANATCAAATTCCGATTGTGTTC
ATTCCTGTT
sequence update 2001. 6. 9
Translated Amino Acid sequence
KQMQQQQQQQDIVIMTNXAMMKICVQMKCVIQLLDVFMKNISCDDDNGCTKDFCDPLTGC
FHKRVVCDDNDKCTDNICNPETGTCSFRRRICTDNNDCTMDWCNQLTGECVYQPVLVCED
YNSCTIDVCNEYKGCQFFNRTCDDRCVCTIDTCKNSTGCIHTPISCDDNNDCTIDNCDCK
LGCIHKELPVDDFNNCTFDQCSHEEGITHTPISCDDNNDCTTDSCDISIGCIXIKFRLCS
FL


Translated Amino Acid sequence (All Frames)
Frame A:
ktnattttttrycnndexcndenlctnemcdpvigciyekyfm****wmykrfl*sidwm
ls*eggm*****my**ym*s*dwnmli*kknmy****lhnglv*sidrrmclstgfsl*r
l**lyn*cl**iqglsif**nl***mclyn*yl*kfnwlyshsnim*rq**lyh**l*l*
twlys*riar**f**lyi*pmfp*rrynshsnfl***q*lyn**l*yfnwlytxqipivf
ipv


Frame B:
KQMQQQQQQQDIVIMTNXAMMKICVQMKCVIQLLDVFMKNISCDDDNGCTKDFCDPLTGC
FHKRVVCDDNDKCTDNICNPETGTCSFRRRICTDNNDCTMDWCNQLTGECVYQPVLVCED
YNSCTIDVCNEYKGCQFFNRTCDDRCVCTIDTCKNSTGCIHTPISCDDNNDCTIDNCDCK
LGCIHKELPVDDFNNCTFDQCSHEEGITHTPISCDDNNDCTTDSCDISIGCIXIKFRLCS
FL


Frame C:
nkcnnnnnnkil***rxmq**kfvyk*nv*ssywmyl*kifhvmmimdvqkifvih*lda
firgwyvmiminvliiyvilrlehahleeeyvliimiaqwtgvin*qenvfinrf*fvki
iivvqlmfvmntrvvnflielvmidvfvqlilvkiqlvvftlqyhvttimivpliivivn
lavfikncplmiliivhltnvpmkkv*ltlqfpvmitmivqlivvifqlvvyxsnsdcvh
sc


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG644 (CFG644Q) /CSM/CF/CFG6-B/CFG644Q.Seq.d/ 1372 0.0
CFG115 (CFG115Q) /CSM/CF/CFG1-A/CFG115Q.Seq.d/ 1304 0.0
SFC228 (SFC228Q) /CSM/SF/SFC2-B/SFC228Q.Seq.d/ 852 0.0
SFA234 (SFA234Q) /CSM/SF/SFA2-B/SFA234Q.Seq.d/ 280 3e-74
SFB849 (SFB849Q) /CSM/SF/SFB8-C/SFB849Q.Seq.d/ 90 6e-17
SLE276 (SLE276Q) /CSM/SL/SLE2-D/SLE276Q.Seq.d/ 52 1e-05
SLE275 (SLE275Q) /CSM/SL/SLE2-D/SLE275Q.Seq.d/ 52 1e-05
SLE266 (SLE266Q) /CSM/SL/SLE2-C/SLE266Q.Seq.d/ 52 1e-05
SFI605 (SFI605Q) /CSM/SF/SFI6-A/SFI605Q.Seq.d/ 52 1e-05
SFF368 (SFF368Q) /CSM/SF/SFF3-C/SFF368Q.Seq.d/ 52 1e-05

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X78948|X78948.1 D.minutum ecmB gene. 38 2e-06 4
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 34 4e-04 12
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces. 32 0.006 12
AL844506|AL844506.1 Plasmodium falciparum chromosome 7. 36 0.009 21
AC005140|AC005140.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 32 0.012 14
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 30 0.017 14
AL356278|AL356278.8 Human DNA sequence from clone RP11-515J24 on chromosome 6 Contains STSs and GSSs. 32 0.036 9
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 34 0.037 11
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence. 36 0.038 12
AC090400|AC090400.3 Homo sapiens chromosome 12 clone RP11-689N18 map 12, LOW-PASS SEQUENCE SAMPLING. 38 0.054 3
dna update 2003.12.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P11976) RecName: Full=Prestalk protein; AltName: Full=Extracell... 159 8e-38
A26838(A26838)prestalk protein precursor - slime mold (Dictyoste... 159 8e-38
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 154 4e-36
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 153 5e-36
AC117072_61(AC117072|pid:none) Dictyostelium discoideum chromoso... 148 1e-34
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 144 4e-33
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor; 94 6e-18
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 92 1e-17
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor; 81 3e-14
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 78 3e-13
protein update 2009. 7. 1
PSORT

psg: 0.87 gvh: 0.45 alm: 0.40 top: 0.40 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
8.0 %: endoplasmic reticulum
4.0 %: cytoskeletal

>> prediction for CFG644 is cyt

5' end seq. ID CFG644F
5' end seq.
>CFG644F.Seq
AAAACAAATGCAACAACAACAACAACAACAAGATATTGTAATAATGACGAATNATGCAAT
GATGAAAATTTGTGTACAAATGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAAT
ATTTCATGTGATGATGATAATGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGC
TTTCATAAGAGGGTGGTATGTGATGATAATGATAAATGTACTGATAATATATGTAATCCT
GAGACTGGAACATGCTCATTTAGAAGAAGAATATGTACTGATAATAATGATTGCACAATG
GACTGGTGTAATCAATTGACAGGAGAATGTGTTTATCAACCGGNTTTAGTTTGTGAAGAT
TATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGA
ACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATT
CACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTGATTGTAA-
---------
Length of 5' end seq. 539
3' end seq. ID CFG644Z
3' end seq.
>CFG644Z.Seq
----------CCAGTTATTGGATGTATTTATGAAAAATATTTCATGTGATGATGATAATG
GATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATGTG
ATGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATTTA
GAAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGACAG
GAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGATG
TTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGTTT
GTACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGACG
ACAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGAAT
TGCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAAGGTATAA
CTCACACTCCAATTTCCTGTGATGATAACAATGATTGTACAACTGATAGTTGTGATATTT
CAATTGGTTGTATACANATCAAATTCCGATTGTGTTCATTCCTGTT
Length of 3' end seq. 636
Connected seq. ID CFG644P
Connected seq.
>CFG644P.Seq
AAAACAAATGCAACAACAACAACAACAACAAGATATTGTAATAATGACGAATNATGCAAT
GATGAAAATTTGTGTACAAATGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAAT
ATTTCATGTGATGATGATAATGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATGC
TTTCATAAGAGGGTGGTATGTGATGATAATGATAAATGTACTGATAATATATGTAATCCT
GAGACTGGAACATGCTCATTTAGAAGAAGAATATGTACTGATAATAATGATTGCACAATG
GACTGGTGTAATCAATTGACAGGAGAATGTGTTTATCAACCGGNTTTAGTTTGTGAAGAT
TATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGA
ACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTATT
CACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTGATTGTAA-
---------CCAGTTATTGGATGTATTTATGAAAAATATTTCATGTGATGATGATAATGG
ATGTACAAAAGATTTTTGTGATCCATTGACTGGATGCTTTCATAAGAGGGTGGTATGTGA
TGATAATGATAAATGTACTGATAATATATGTAATCCTGAGACTGGAACATGCTCATTTAG
AAGAAGAATATGTACTGATAATAATGATTGCACAATGGACTGGTGTAATCAATTGACAGG
AGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGATTATAATAGTTGTACAATTGATGT
TTGTAATGAATACAAGGGTTGTCAATTTTTTAATAGAACTTGTGATGATAGATGTGTTTG
TACAATTGATACTTGTAAAAATTCAACTGGTTGTATTCACACTCCAATATCATGTGACGA
CAATAATGATTGTACCATTGATAATTGTGATTGTAAACTTGGCTGTATTCATAAAGAATT
GCCCGTTGATGATTTTAATAATTGTACATTTGACCAATGTTCCCATGAAGAAGGTATAAC
TCACACTCCAATTTCCTGTGATGATAACAATGATTGTACAACTGATAGTTGTGATATTTC
AATTGGTTGTATACANATCAAATTCCGATTGTGTTCATTCCTGTT
Length of connected seq. 1175
Full length Seq ID CFG644E
Full length Seq.
>CFG644E.Seq
AAAACAAATGCAACAACAACAACAACAACAAGATATTGTAATAATGACGAATNATGCAAT
GATGAAAATTTGTGTACAAATGAAATGTGTGATCCAGTTATTGGATGTATTTATGAAAAA
TATTTCATGTGATGATGATAATGGATGTACAAAAGATTTTTGTGATCCATTGACTGGATG
CTTTCATAAGAGGGTGGTATGTGATGATAATGATAAATGTACTGATAATATATGTAATCC
TGAGACTGGAACATGCTCATTTAGAAGAAGAATATGTACTGATAATAATGATTGCACAAT
GGACTGGTGTAATCAATTGACAGGAGAATGTGTTTATCAACCGGTTTTAGTTTGTGAAGA
TTATAATAGTTGTACAATTGATGTTTGTAATGAATACAAGGGTTGTCAATTTTTTAATAG
AACTTGTGATGATAGATGTGTTTGTACAATTGATACTTGTAAAAATTCAACTGGTTGTAT
TCACACTCCAATATCATGTGACGACAATAATGATTGTACCATTGATAATTGTGATTGTAA
ACTTGGCTGTATTCATAAAGAATTGCCCGTTGATGATTTTAATAATTGTACATTTGACCA
ATGTTCCCATGAAGAAGGTATAACTCACACTCCAATTTCCTGTGATGATAACAATGATTG
TACAACTGATAGTTGTGATATTTCAATTGGTTGTATACANATCAAATTCCGATTGTGTTC
ATTCCTGTT
Length of full length seq. 729