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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG517
Library CF
(Link to library)
Clone ID CFG517
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFG517P
(Link to Original site)
Representative DNA sequence 
>CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGNCGNN
CTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAG
GGGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAGCCATCACCTTAGAGGTTGAAG
GTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTNCTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTNGGTTCTCAGATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAACA
TTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTTCCCNCCAGATCAACAAAGATT
AATTTTCGCTGGTAAACAATTAGAAGAGGGGCGTACTCTCTNTGACTACACATTCAAAAA
GATCCNCTCTNCATTTAGTTXXXXXXXXXXAACTCTCNCTGTAAGNCNTCNCCTTAGAGN
TGAAAGGTAGTGATAACTTGAAATGTCAAAGCCAAATCCAAGACAAAGAAGGTATCCCAC
CAGATCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTG
ACTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGGTATGC
AAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGTGATA
ACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAAC
GTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCC
AAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAA
AAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATG
TCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCG
CTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAG
GTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAA
TCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAAT
TAGAAGATGGTCGTACTCTCTCGATTACAACATTCAAAAGGAATCCACTCTCCATTAGTT
CTCAGATTAAGAGGGGAACTAAGTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fflpyffvnsnn***ffkffiflni*kfffsfvyyfffhfyilinyanfc*nshw*nhhi
gs*r*xqh*kcqg*nsrqrrystrstkinlcw*tixxwxxsf*lqhskgihspfssxixr
gyanlcknshw*shhlrg*r*x*h*kc*s*nsrqrryptrstkinfrw*tirxwsxsl*l
qhskgihsplgsqixrxyanlcknldw*nyhlgsrrf*qh*kc*SQNPRQRRFPPDQQRL
IFAGKQLEEGRTLXDYTFKKIXSXFS---

---TLXVXXXLRXER***lemskpnprqrryptrsxkinfrw*tirrwsysl*lqhpkri
hspfsfkikrwyanlc*nshw*nhhlgsrr***h*kcqsqnprqrrystrsttshfrw*t
irrwpysl*lqhpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kcqsqnsrq
rrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr*nyhlgs
rr***h*kc*sqnprqrrystrsttshfrw*tirrwsysldyniqkestlh*fsd*egn*
v
Translated Amino Acid sequence (All Frames) 
Frame A:
ifstiffck***liiif*ilyffkhikiffflcilfffpflhin*lckfllklslvkpsh
wklkvxttlkmsrlkfktkkvfhqinkd*sllvnnxxmxxlflittfkrnplsi*flx*x
gvcksl*klslvkpsp*rlkvxitlkmlklkfktkkvshqinkd*fslvnn*xmvvlslt
ttfkrnplstxfsd*xxvcksl*kp*lvklspwkskvlttlkmlkpksktkkvpxrstki
nfrw*tirrgaysl*lhiqkdplxi*---

---nsxckxsp*x*kvvit*nvkaksktkkvshqixkd*fslvnn*kmvvlsltttskkn
plsi*f*d*evvcksllklslvkpspwkskvvitlkmskpksktkkvfhqinnvsfslvn
n*kmavlslittskknplsi*fsd*evvcksl*kp*lvrpshwkskvlitlkmskpkfkt
kkvfhqinkd*fslvnn*kmvvlslttifkrnplsi*fsd*evvcksllkl*qvklspwk
skvvitlkmlkpksktkkvfhqinnvsfslvnn*kmvvlsrlqhskgihsplvlrlrgel
s

Frame B:
fflpyffvnsnn***ffkffiflni*kfffsfvyyfffhfyilinyanfc*nshw*nhhi
gs*r*xqh*kcqg*nsrqrrystrstkinlcw*tixxwxxsf*lqhskgihspfssxixr
gyanlcknshw*shhlrg*r*x*h*kc*s*nsrqrryptrstkinfrw*tirxwsxsl*l
qhskgihsplgsqixrxyanlcknldw*nyhlgsrrf*qh*kc*SQNPRQRRFPPDQQRL
IFAGKQLEEGRTLXDYTFKKIXSXFS---

---TLXVXXXLRXER***lemskpnprqrryptrsxkinfrw*tirrwsysl*lqhpkri
hspfsfkikrwyanlc*nshw*nhhlgsrr***h*kcqsqnprqrrystrsttshfrw*t
irrwpysl*lqhpkrihspfssqikrwyanlcknldw*dhhigsrrf**h*kcqsqnsrq
rrystrstkinfrw*tirrwsysl*lqyskgihspfssqikrwyanlc*nfnr*nyhlgs
rr***h*kc*sqnprqrrystrsttshfrw*tirrwsysldyniqkestlh*fsd*egn*
v

Frame C:
ffyhifl*iviinnnflnslff*tyknfffplyiiffsifty*limqifvktltgktitl
evegxdnienvkakiqdkegippdqqrlifagkqlxxgrxlsdyniqkestlhlvlxlxg
gmqifvktltgkaitlevegxdnienvkakiqdkegippdqqrlifagkqlexgrxlsdy
niqkestlhxvlrlxggmqifvktltgktitlevegsdnienvkakiqdkegsxqinkd*
fslvnn*krgvlsxtthskrsxlhlv---

---lsl*xxxlexkgsdnlkcqsqiqdkegippdxqrlifagkqledgrtlsdyniqkes
tlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdkegippdqqrlifagkq
ledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvkakiqdk
egippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlev
egsdnienvkakiqdkegippdqqrlifagkqledgrtlsittfkrnplsissqikrgtk
f
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG517 (CFG517Q) /CSM/CF/CFG5-A/CFG517Q.Seq.d/                       2954   0.0
AFE236 (AFE236Q) /CSM/AF/AFE2-B/AFE236Q.Seq.d/                       1596   0.0
CFK385 (CFK385Q) /CSM/CF/CFK3-D/CFK385Q.Seq.d/                       1584   0.0
VFI435 (VFI435Q) /CSM/VF/VFI4-B/VFI435Q.Seq.d/                       1542   0.0
AFO679 (AFO679Q) /CSM/AF/AFO6-D/AFO679Q.Seq.d/                       1513   0.0
CFG825 (CFG825Q) /CSM/CF/CFG8-B/CFG825Q.Seq.d/                       1507   0.0
CFK313 (CFK313Q) /CSM/CF/CFK3-A/CFK313Q.Seq.d/                       1505   0.0
SFD385 (SFD385Q) /CSM/SF/SFD3-D/SFD385Q.Seq.d/                       1495   0.0
AFG257 (AFG257Q) /CSM/AF/AFG2-C/AFG257Q.Seq.d/                       1467   0.0
CFB835 (CFB835Q) /CSM/CF/CFB8-B/CFB835Q.Seq.d/                       1459   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.  1518   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   908   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   908   0.0    5
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   908   0.0    5
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   890   0.0    5
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   791   0.0    4
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   791   0.0    4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   735   0.0    4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      337   0.0    6
Y17558|Y17558.1 Candida albicans UB14 gene.                       418   e-155  5
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   796   0.0
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   795   0.0
AF285161_1(AF285161|pid:none) Mus musculus cell-line C3H/He poly...   792   0.0
BC093445_1(BC093445|pid:none) Homo sapiens ubiquitin C, mRNA (cD...   792   0.0
BC080583_1(BC080583|pid:none) Homo sapiens cDNA clone IMAGE:2822...   792   0.0
AY118702_1(AY118702|pid:none) Drosophila melanogaster AT20865 fu...   791   0.0
AB003731_1(AB003731|pid:none) Cricetulus griseus gene for polyub...   791   0.0
D17296_1(D17296|pid:none) Rattus norvegicus mRNA for polyubiquit...   791   0.0
AE014296_755(AE014296|pid:none) Drosophila melanogaster chromoso...   791   0.0
AB122067_1(AB122067|pid:none) Crassostrea gigas mRNA for polyubi...   791   0.0
protein update 2009. 5.14
PSORT 

 psg: 0.51  gvh: 0.51  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for CFG517 is nuc
5' end seq. ID CFG517F
5' end seq. 
>CFG517F.Seq
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGNCGNN
CTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAG
GGGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAGCCATCACCTTAGAGGTTGAAG
GTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTNCTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTNGGTTCTCAGATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAACA
TTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTTCCCNCCAGATCAACAAAGATT
AATTTTCGCTGGTAAACAATTAGAAGAGGGGCGTACTCTCTNTGACTACACATTCAAAAA
GATCCNCTCTNCATTTAGTT----------
Length of 5' end seq. 800
3' end seq. ID CFG517Z
3' end seq. 
>CFG517Z.Seq
----------AACTCTCNCTGTAAGNCNTCNCCTTAGAGNTGAAAGGTAGTGATAACTTG
AAATGTCAAAGCCAAATCCAAGACAAAGAAGGTATCCCACCAGATCANCAAAGATTAATT
TTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAACATCCAAAAAGAA
TCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTC
ACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTCAAAGCC
AAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAA
CAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCCAAAAAGAATCCACTCTCCAT
TTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAAAAACCTTGACTGGTAAGACC
ATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATGTCAAAGCCAAAATTCAAGAC
AAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGAT
GGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGA
TTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAGGTAAAACTATCACCTTGGAA
GTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATT
CCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTC
TCGATTACAACATTCAAAAGGAATCCACTCTCCATTAGTTCTCAGATTAAGAGGGGAACT
AAGTTT
Length of 3' end seq. 896
Connected seq. ID CFG517P
Connected seq. 
>CFG517P.Seq
ATTTTTTCTACCATATTTTTTTGTAAATAGTAATAATTAATAATAATTTTTTAAATTCTT
TATTTTTTTAAACATATAAAAATTTTTTTTTTCCTTTGTATATTATTTTTTTTTCCATTT
TTACATATTAATTAATTATGCAAATTTTTGTTAAAACTCTCACTGGTAAAACCATCACAT
TGGAAGTTGAAGGTAGNGACAACATTGAAAATGTCAAGGCTAAAATTCAAGACAAAGAAG
GTATTCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAACAATTANAANATGGNCGNN
CTCTTTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTTANATTAANAG
GGGGTATGCAAATCTTTGTAAAAACTCTCACTGGTAAAGCCATCACCTTAGAGGTTGAAG
GTAGNGATAACATTGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAG
ATCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAANATGGTCGTNCTCTCTCTGACT
ACAACATTCAAAAGGAATCCACTCTCCACTNGGTTCTCAGATTAANAGGNGGTATGCAAA
TCTTTGTAAAAACCTTGACTGGTAAAACTATCACCTTGGAAGTCGAAGGTTCTGACAACA
TTGAAAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTTCCCNCCAGATCAACAAAGATT
AATTTTCGCTGGTAAACAATTAGAAGAGGGGCGTACTCTCTNTGACTACACATTCAAAAA
GATCCNCTCTNCATTTAGTT----------AACTCTCNCTGTAAGNCNTCNCCTTAGAGN
TGAAAGGTAGTGATAACTTGAAATGTCAAAGCCAAATCCAAGACAAAGAAGGTATCCCAC
CAGATCANCAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTG
ACTACAACATCCAAAAAGAATCCACTCTCCATTTAGTTTTAAGATTAAGAGGTGGTATGC
AAATCTTTGTTAAAACTCTCACTGGTAAAACCATCACCTTGGAAGTCGAAGGTAGTGATA
ACATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAAC
GTCTCATTTTCGCTGGTAAACAATTAGAAGATGGCCGTACTCTCTCTGATTACAACATCC
AAAAAGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTAA
AAACCTTGACTGGTAAGACCATCACATTGGAAGTCGAAGGTTCTGATAACATTGAAAATG
TCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAACAAAGATTAATTTTCG
CTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGACTACAATATTCAAAAGGAATCCA
CTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTTTAACAG
GTAAAACTATCACCTTGGAAGTCGAAGGTAGTGATAACATTGAAAATGTTAAAGCCAAAA
TCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCTGGTAAACAAT
TAGAAGATGGTCGTACTCTCTCGATTACAACATTCAAAAGGAATCCACTCTCCATTAGTT
CTCAGATTAAGAGGGGAACTAAGTTT
Length of connected seq. 1696
Full length Seq ID -
Full length Seq. -
Length of full length seq. -