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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG508
Library CF
(Link to library)
Clone ID CFG508
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFG508P
(Link to Original site)
Representative DNA sequence 
>CFG508 (CFG508Q) /CSM/CF/CFG5-A/CFG508Q.Seq.d/
AATATTTTTTTTATCTTNTTATATACAATTTAATTTATTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGNGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGNGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACCXXXXXXXXXXATTAAAAAAGCACAACAAA
GAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGAT
TGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTC
AACGATATAACCCAAACC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
niffixlyti*FINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHN
FWACNSVINQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIAD
HSRRNHVDNDFIXCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDN---

---IKKAQQRMAEQEERRRLMQEESERRRLQRNRERQEPIRTYTTAQEAQRYNPN
Translated Amino Acid sequence (All Frames) 
Frame A:
niffixlyti*FINFLMAKLKIIIYIVIIFCSSIQFSFGYEKAIASFYPPPGDLHPTTHN
FWACNSVINQNGGFGPLECNNAGIYAIFSTANEIIDGNEYMLPLFYIGRSTIDVRDRIAD
HSRRNHVDNDFIXCYMRFPALDDYGYSNKVTPVEQALLHQFKTQFNSWDN---

---IKKAQQRMAEQEERRRLMQEESERRRLQRNRERQEPIRTYTTAQEAQRYNPN

Frame B:
ifflsxyiqfnllif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqvicipllii
fghvivsltktxdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeielli
tvdetmlimislxvicvsqhwmimvtvtk*hplnklsftnsklnsthgit---

---lkkhnkewlnkkkeeg*ckkkvkeddcketekdksqleliqlhkklnditqt

Frame C:
yffylxiynliy*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*f
lgm**ch*pkrxirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*s
q*tkpc***fhxvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*---

---*ksttkng*trrkkkvdarrk*kktiakkqrktran*nlynctrssti*pk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG508 (CFG508Q) /CSM/CF/CFG5-A/CFG508Q.Seq.d/                        971   0.0
CFA848 (CFA848Q) /CSM/CF/CFA8-B/CFA848Q.Seq.d/                        971   0.0
AFE266 (AFE266Q) /CSM/AF/AFE2-C/AFE266Q.Seq.d/                        971   0.0
CFI231 (CFI231Q) /CSM/CF/CFI2-B/CFI231Q.Seq.d/                        965   0.0
CFH547 (CFH547Q) /CSM/CF/CFH5-B/CFH547Q.Seq.d/                        965   0.0
CFH234 (CFH234Q) /CSM/CF/CFH2-B/CFH234Q.Seq.d/                        965   0.0
CFH223 (CFH223Q) /CSM/CF/CFH2-A/CFH223Q.Seq.d/                        965   0.0
AFB513 (AFB513Q) /CSM/AF/AFB5-A/AFB513Q.Seq.d/                        965   0.0
AFE486 (AFE486Q) /CSM/AF/AFE4-D/AFE486Q.Seq.d/                        961   0.0
CFB283 (CFB283Q) /CSM/CF/CFB2-D/CFB283Q.Seq.d/                        959   0.0
own update 2003. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    68   3e-11  8
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    76   5e-11  5
AC117081|AC117081.1 Dictyostelium discoideum chromosome 2 map 4903137-4960091 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    68   2e-09  4
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence.    32   5e-04  11
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    38   7e-04  9
AZ930073|AZ930073.1 479.dil58d12.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dil58d12.s1, DNA sequence.    40   0.002  2
AL096784|AL096784.2 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P7.    38   0.003  4
AZ928704|AZ928704.1 479.dif17a08.s1 Saccharomyces kluyveri Saccharomyces kluyveri genomic clone 479.dif17a08.s1, DNA sequence.    40   0.005  2
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  36   0.006  10
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    40   0.007  9
dna update 2004. 1.30
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 855,249,976
protein update 2009. 5.14
PSORT 

 psg: 0.97  gvh: 0.62  alm: 0.22  top: 0.30  tms: 0.07  mit: 0.32  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFG508 is end
5' end seq. ID CFG508F
5' end seq. 
>CFG508F.Seq
AATATTTTTTTTATCTTNTTATATACAATTTAATTTATTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGNGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGNGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACC----------
Length of 5' end seq. 511
3' end seq. ID CFG508Z
3' end seq. 
>CFG508Z.Seq
----------ATTAAAAAAGCACAACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTT
GATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGAAACAGAGAAAGACAAGAGCCAAT
TAGAACTTATACAACTGCACAAGAAGCTCAACGATATAACCCAAACC
Length of 3' end seq. 157
Connected seq. ID CFG508P
Connected seq. 
>CFG508P.Seq
AATATTTTTTTTATCTTNTTATATACAATTTAATTTATTAATTTTTTAATGGCAAAACTA
AAAATAATTATTTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATAC
GAAAAGGCGATTGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAAT
TTTTGGGCATGTAATAGTGTCATTAACCAAAACGGNGGATTCGGTCCACTTGAATGCAAT
AATGCCGGTATCTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATAC
ATGCTTCCACTATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGAT
CACAGTAGACGAAACCATGTTGATAATGATTTCATTGNGTGTTATATGCGTTTCCCAGCA
TTGGATGATTATGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAA
TTCAAAACTCAATTCAACTCATGGGATAACC----------ATTAAAAAAGCACAACAAA
GAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGAT
TGCAAAGAAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTC
AACGATATAACCCAAACC
Length of connected seq. 668
Full length Seq ID -
Full length Seq. -
Length of full length seq. -