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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG479
Library CF
(Link to library)
Clone ID CFG479
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16449-1
Original site URL
Representative seq. ID CFG479P
(Link to Original site)
Representative DNA sequence 
>CFG479 (CFG479Q) /CSM/CF/CFG4-D/CFG479Q.Seq.d/
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTAGATATC
ATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTAAAGCTTTAAAAACTTTA
CAAACCTCTTTAAAAAATAAAACAATTGATAAAGCTAAXXXXXXXXXXTGATAAAGCTAA
ACAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGGTAAACATG
TAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGA
CATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGA
ATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTC
CAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAG
CATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACA
GCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTT
TACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAG
GTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTG
AATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTAGAAGTTGT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLLCKMSI
PAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGASTGAGLG
NAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDLDIISKELIAKDIEFTTKALKTL
QTSLKNKTIDKA---

---DKAKQVELGTYNKVLELLESG*tckiwylfkc*n*tcs*ftfidiktsnlfnqsf*r
rfh*kee*mvskd*smg**kwwwyndssfskf*ksfigfifr**kksi*krkrcs*yyak
nh*nwlqhikshqflymw*r*s*klvftkr*qsstscwchsh*frkrfhyg*nyglf*lf
riki*s*m*ikrki*ngr*klev
Translated Amino Acid sequence (All Frames) 
Frame A:
ifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLLCKMSI
PAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGASTGAGLG
NAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDLDIISKELIAKDIEFTTKALKTL
QTSLKNKTIDKA---

---**s*ts*twyl**sfriirirvnm*dmvliqmlklnmfviyiy*hqnqqfi*siflk
kislerring*qrlkhglmkmvvvq*fqfq*vlkklywiylqmmkekhmkkkkvqlvlcq
kslklvtah*issislhvvkmklevgvykkvtklhkllvsftliskkvslwlklwliltf
sn*nlklnvnqeeniewkvktrsc

Frame B:
yfqfvlrlrfynikcqklqlnl*ivvqpsaelvttskwvllvcqmlvkvhcsiyyvkcqf
qlkishfvlliqiyhvalfqmnvilgyvnignqrvkshliykslillv*lkvlqlvlvlv
mlsfltfnksmvfti*fvplkmmksfmlkiqstqsei*isfqkn*lpkilnsqlkl*kly
kpl*kikqlikl---

---DKAKQVELGTYNKVLELLESG*tckiwylfkc*n*tcs*ftfidiktsnlfnqsf*r
rfh*kee*mvskd*smg**kwwwyndssfskf*ksfigfifr**kksi*krkrcs*yyak
nh*nwlqhikshqflymw*r*s*klvftkr*qsstscwchsh*frkrfhyg*nyglf*lf
riki*s*m*ikrki*ngr*klev

Frame C:
ifsly*d*gfii*nvknss*tcrl*fnpqqsw*pppngccwyakcw*kfivqfim*nvns
s*kfpilyy*skfitlrcsr*tlylvm*tletke*spilftnh*ycwfs*rcfnwcwsw*
cfpfshstsrwylpydscl*k**nhsc*rfsrpsqrfryhfkrincqry*ihn*sfknft
nlfkk*nn**s*---

---iklnklnlvliikf*ny*nqgkhvrygtysnaetehvrdlhlltskpaiylinlsee
dfirkknkwlakikawvdengggtmipvsvsfekalldlssdderkayekekgavsimpk
iiktgystlnlinfftcgkdevrswclqkgnkapqaagvihtdfekgfimaetmaysdff
elkseaecksrgkyrmegkn*kl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG479 (CFG479Q) /CSM/CF/CFG4-D/CFG479Q.Seq.d/                       2302   0.0
VFO147 (VFO147Q) /CSM/VF/VFO1-B/VFO147Q.Seq.d/                       1166   0.0
VFK212 (VFK212Q) /CSM/VF/VFK2-A/VFK212Q.Seq.d/                       1166   0.0
VFI192 (VFI192Q) /CSM/VF/VFI1-D/VFI192Q.Seq.d/                       1166   0.0
VFF322 (VFF322Q) /CSM/VF/VFF3-A/VFF322Q.Seq.d/                       1166   0.0
VFE271 (VFE271Q) /CSM/VF/VFE2-C/VFE271Q.Seq.d/                       1166   0.0
VFC844 (VFC844Q) /CSM/VF/VFC8-B/VFC844Q.Seq.d/                       1166   0.0
SFC630 (SFC630Q) /CSM/SF/SFC6-B/SFC630Q.Seq.d/                       1166   0.0
CFH382 (CFH382Q) /CSM/CF/CFH3-D/CFH382Q.Seq.d/                       1166   0.0
CFF767 (CFF767Q) /CSM/CF/CFF7-C/CFF767Q.Seq.d/                       1166   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD114066|CD114066.1 ME1-0032P-A116-F12-U.G ME1-0032 Schistosoma mansoni cDNA cloneME1-0032P-A116-F12.G, mRNA sequence.    44   1e-11  4
BC029376|BC029376.1 Homo sapiens, hypothetical protein PTD004, clone MGC:32564 IMAGE:4658276, mRNA, complete cds.    48   3e-11  4
BF936899|BF936899.1 EST459954 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCC91 5' end, mRNA sequence.    44   4e-11  4
AF134478|AF134478.1 Homo sapiens GTP-binding protein mRNA, complete cds.    48   4e-11  4
CD080433|CD080433.1 MA3-9999U-M309-H09-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M309-H09.B, mRNA sequence.    44   5e-11  3
BD227316|BD227316.1 Secreted proteins and polynucleotides encoding them.    48   5e-11  4
AI975066|AI975066.1 EST269660 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAM41 5' end, mRNA sequence.    44   5e-11  3
AL833441|AL833441.1 Homo sapiens mRNA; cDNA DKFZp313H1942 (from clone DKFZp313H1942).    48   5e-11  4
CD120224|CD120224.1 ME1-0060T-D149-F02-U.G ME1-0060 Schistosoma mansoni cDNA clone ME1-0060T-D149-F02.G, mRNA sequence.    44   5e-11  3
AX210655|AX210655.1 Sequence 297 from Patent WO0157058.            48   5e-11  4
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008214_456(AP008214|pid:none) Oryza sativa (japonica cultivar-...   217   e-106
BT040728_1(BT040728|pid:none) Zea mays full-length cDNA clone ZM...   220   e-106
BT052517_1(BT052517|pid:none) Medicago truncatula clone MTYFD_FE...   214   e-104
CP001326_559(CP001326|pid:none) Micromonas sp. RCC299 chromosome...   199   e-102
CP000589_33(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ...   204   e-101
AL844506_219(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...   195   e-100
EF085812_1(EF085812|pid:none) Picea sitchensis clone WS0288_L10 ...   211   e-100
BT074849_1(BT074849|pid:none) Osmerus mordax clone omor-rgc-506-...   196   3e-99
(Q7ZWM6) RecName: Full=Obg-like ATPase 1;          EC=3.6.3.-;  ...   195   3e-99
CP000596_68(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 ...   198   4e-99
protein update 2009. 5.14
PSORT 

 psg: 0.79  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFG479 is cyt
5' end seq. ID CFG479F
5' end seq. 
>CFG479F.Seq
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTAGATATC
ATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTAAAGCTTTAAAAACTTTA
CAAACCTCTTTAAAAAATAAAACAATTGATAAAGCTAA----------
Length of 5' end seq. 578
3' end seq. ID CFG479Z
3' end seq. 
>CFG479Z.Seq
----------TGATAAAGCTAAACAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAAT
TATTAGAATCAGGGTAAACATGTAAGATATGGTACTTATTCAAATGCTGAAACTGAACAT
GTTCGTGATTTACATTTATTGACATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAA
GAAGATTTCATTAGAAAGAAGAATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAA
AATGGTGGTGGTACAATGATTCCAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTA
TCTTCAGATGATGAAAGAAAAGCATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCA
AAAATCATTAAAACTGGTTACAGCACATTAAATCTCATCAATTTCTTTACATGTGGTAAA
GATGAAGTTAGAAGTTGGTGTTTACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTC
ATTCACACTGATTTCGAAAAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTT
TTCGAATTAAAATCTGAAGCTGAATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAA
AACTAGAAGTTGT
Length of 3' end seq. 603
Connected seq. ID CFG479P
Connected seq. 
>CFG479P.Seq
ATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATGTCAAAAACTCCAGCT
AAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCACCTCCAAATGGGTGTT
GTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTATTATGTAAAATGTCAATT
CCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTATCACGTTGCGCTGTTCCA
GATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGAGTGAAGTCCCATCTTAT
TTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAACTGGTGCTGGTCTTGGT
AATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACCATATGATTCGTGCCTTT
GAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAGTCAGAGATTTAGATATC
ATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTAAAGCTTTAAAAACTTTA
CAAACCTCTTTAAAAAATAAAACAATTGATAAAGCTAA----------TGATAAAGCTAA
ACAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATTATTAGAATCAGGGTAAACATG
TAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGA
CATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGA
ATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTC
CAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAG
CATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACA
GCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTT
TACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAG
GTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTG
AATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAACTAGAAGTTGT
Length of connected seq. 1181
Full length Seq ID -
Full length Seq. -
Length of full length seq. -