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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG476
Library CF
(Link to library)
Clone ID CFG476
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFG476P
(Link to Original site)
Representative DNA sequence 
>CFG476 (CFG476Q) /CSM/CF/CFG4-D/CFG476Q.Seq.d/
ATAATAGTTAAAATCTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAA
TATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTA
TGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATA
GATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCAT
ACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCA
ATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCAC
AATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTT
CTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATT
CAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAA
CATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAAT
TTXXXXXXXXXXGATTTCCAGTGGAGGTGCATATCATTACCATGACCACAAAGACCATCT
CGAGAAGAATACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGA
GATCAAGAAGANCAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAA
AGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAG
TCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGA
GAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACT
AGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCA
AGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAAT
ACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCA
TACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTT
CAAAGATTCTATAGAAANAATTCTATGCTATTACTCTATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ns*NLFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYR
FYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQ
WPARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNAT
CTACFDLPMDISPGLYILQF---

---ISSGGAYHYHDHKDHLEKNTHKDHLVKNFKEKKDKEIKKXKP*eerdkmmsilncke
kkkenkcnvi*reklqqkspeninqpfsnil*emvnwkensqvqvgvhiqrrrlnimkld
qylemfyslnvqldpivyqvkakepststf*vlkksfqilklts*pkvkkfhsqfh*nht
lihhllmmvihtiqlafhfkdsiexilcyysi
Translated Amino Acid sequence (All Frames) 
Frame A:
iivkiffllf*ifflk*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqeti
dfmnnkamvsyskevnsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfah
ngqqetmrlh*elvplvstflqk*hqmlpqiqvkmysskiqsiqahletvqnimkiqimq
hvlhvliyqwiflqvyiffn---

---dfqwrcislp*pqrpsreeypqrpsreelqreerqrdqexqairrkrqndeylelqr
ekereqmqrdierkaaaeesrkhkstifqyimrdgklerefssaswgpyskkeveyyetr
pilgnvlffkcatgsnclsskgkrtlninilgfkeiisntqvnlltkgekiplsislepy
idssfiddgdsyntisvplqrfyrxnsmllly

Frame B:
**lksffycfkyff*neknniifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*
il*ttrrwflipkr*ihktipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlpt
maskkpcdcikswyr*flpfskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cn
mycmf*ftngyfsrfiyssi---

---ISSGGAYHYHDHKDHLEKNTHKDHLVKNFKEKKDKEIKKXKP*eerdkmmsilncke
kkkenkcnvi*reklqqkspeninqpfsnil*emvnwkensqvqvgvhiqrrrlnimkld
qylemfyslnvqldpivyqvkakepststf*vlkksfqilklts*pkvkkfhsqfh*nht
lihhllmmvihtiqlafhfkdsiexilcyysi

Frame C:
ns*NLFFIVLNIFFKMKKIILFLTVLLVLLFGKIESHSFMKCVDWDFGSNSCAAYPRNYR
FYEQQGDGFLFQRGKFTKPYPTELGQSCGPAQRRSSSITNLYSSKHPMGNFQAGQKICPQ
WPARNHATALRAGTVSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNAT
CTACFDLPMDISPGLYILQF---

---fpvevhiitmttktisrriptktis*rtskrrktkrsrrxshkkketk**vs*iakr
krkrtnat*yrekscsrrvqkt*inhfpiyyerw*igkrilkcklgsifkegg*il*n*t
ntwkcfil*mcnwiqlfik*rqknpqhqhfrf*rnhfkyss*plnqr*knstlnfirtih
*fiiy**w*fiqyn*rstskil*kxfyaitl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK281 (SFK281Q) /CSM/SF/SFK2-D/SFK281Q.Seq.d/                       1080   0.0
SFI679 (SFI679Q) /CSM/SF/SFI6-D/SFI679Q.Seq.d/                       1080   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                       1080   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                       1080   0.0
SFE718 (SFE718Q) /CSM/SF/SFE7-A/SFE718Q.Seq.d/                       1080   0.0
SFD893 (SFD893Q) /CSM/SF/SFD8-D/SFD893Q.Seq.d/                       1080   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                       1080   0.0
SFB148 (SFB148Q) /CSM/SF/SFB1-B/SFB148Q.Seq.d/                       1080   0.0
SFB106 (SFB106Q) /CSM/SF/SFB1-A/SFB106Q.Seq.d/                       1080   0.0
CHO842 (CHO842Q) /CSM/CH/CHO8-B/CHO842Q.Seq.d/                       1080   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   4e-04  17
AC131557|AC131557.4 Rattus norvegicus clone CH230-8O19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   0.012  10
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.014  12
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   0.029  12
AC106806|AC106806.2 Homo sapiens chromosome 5 clone RP11-510I6, complete sequence.    38   0.033  10
AF246928|AF246928.1 Homo sapiens chromosome 21 BAC B318B17 map 21q11.2, complete sequence.    34   0.036  8
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.059  17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.069  18
AL583890|AL583890.13 Mouse DNA sequence from clone RP23-212F17 on chromosome 3.    50   0.076  1
AC116940|AC116940.2 Pan troglodytes clone RP43-166L2, WORKING DRAFT SEQUENCE.    50   0.076  1
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.074
CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    41   0.097
AF124332_1(AF124332|pid:none) Danio rerio double-stranded RNA-sp...    37   1.4
BC095969_1(BC095969|pid:none) Mus musculus signal-induced prolif...    36   2.4
AK044193_1(AK044193|pid:none) Mus musculus 10 days neonate corte...    36   2.4
AF506894_1(AF506894|pid:none) Papaya ringspot virus isolate THW-...    35   4.1
protein update 2009. 5.14
PSORT 

 psg: 0.94  gvh: 0.72  alm: 0.45  top: 0.33  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 24.0 %: extracellular, including cell wall
	 24.0 %: mitochondrial
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFG476 is exc
5' end seq. ID CFG476F
5' end seq. 
>CFG476F.Seq
ATAATAGTTAAAATCTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAA
TATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTA
TGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATA
GATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCAT
ACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCA
ATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCAC
AATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTT
CTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATT
CAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAA
CATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAAT
TT----------
Length of 5' end seq. 602
3' end seq. ID CFG476Z
3' end seq. 
>CFG476Z.Seq
----------GATTTCCAGTGGAGGTGCATATCATTACCATGACCACAAAGACCATCTCG
AGAAGAATACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGA
TCAAGAAGANCAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAG
AGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTC
CAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGAGA
ATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAG
ACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAG
TAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATAC
TCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATA
CATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCA
AAGATTCTATAGAAANAATTCTATGCTATTACTCTATC
Length of 3' end seq. 628
Connected seq. ID CFG476P
Connected seq. 
>CFG476P.Seq
ATAATAGTTAAAATCTTTTTTTTATTGTTTTAAATATTTTTTTTAAAATGAAAAAAATAA
TATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATTGAATCACATTCATTTA
TGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCATACCCAAGAAACTATA
GATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGTAAATTCACAAAACCAT
ACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGAAGTTCTTCAATTACCA
ATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGTCAAAAGATTTGCCCAC
AATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACCGTTAGTTTCTACCTTT
CTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGATGTATTCTTCCAAAATT
CAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGAAAATACAAATAATGCAA
CATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGGTTTATATATTCTTCAAT
TT----------GATTTCCAGTGGAGGTGCATATCATTACCATGACCACAAAGACCATCT
CGAGAAGAATACCCACAAAGACCATCTCGTGAAGAACTTCAAAGAGAAGAAAGACAAAGA
GATCAAGAAGANCAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAA
AGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAG
TCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGA
GAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACT
AGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCA
AGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAAT
ACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCA
TACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTT
CAAAGATTCTATAGAAANAATTCTATGCTATTACTCTATC
Length of connected seq. 1230
Full length Seq ID -
Full length Seq. -
Length of full length seq. -