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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG407
Library CF
(Link to library)
Clone ID CFG407
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16450-1
Original site URL
Representative seq. ID CFG407P
(Link to Original site)
Representative DNA sequence 
>CFG407 (CFG407Q) /CSM/CF/CFG4-A/CFG407Q.Seq.d/
AAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATT
GAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCA
TACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGT
AAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGA
AGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGT
CAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACC
CGTTAGTTTCTACCTTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGA
TGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGA
AAATACAAATAATGCAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGG
TTTATATATTCTTCAATTTTTCTGXXXXXXXXXXGTGAAGAACTTCAAAGAGAAGAAAGA
CAAAGAGATCAAGAAGAACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAA
TTGCAAAGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCA
GAAGAGTCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTG
GAAAGTGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTAT
GAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGT
TTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATT
TCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTA
GAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTT
CCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
k*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqetidfmnnkamvsyskev
nsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfahngqqetmrlh*ELVP
VSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATCTACFDLPMDISPG
LYILQFF---

---EELQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKST
IFQYIMRDGKLESEFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTL
NINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNE
FYAITL
Translated Amino Acid sequence (All Frames) 
Frame A:
kmkkiilfltvllvllfgkieshsfmkcvdwdfgsnscaayprnyrfyeqqgdgflfqrg
kftkpyptelgqscgpaqrrsssitnlysskhpmgnfqagqkicpqwparnhatalragt
r*flpfskndircsrrsksrcilpkfnpfkpiwklykil*kyk*cnmycmf*ftngyfsr
fiyssifl---

---vknfkekkdkeikknkp*eerdkmmsilnckekkkenkcnvi*reklqqkspeninq
pfsnil*emvnwkvnsqvqvgvhiqrrrlnimkldqylemfyslnvqldpivyqvkakep
ststf*vlkksfqilklts*pkvkkfhsqfh*nhtlihhllmmvihtiqlafhfkdsiem
nsmllly

Frame B:
k*kk*yyf*qyylyyylvklnhihl*nvwigilvqihvqhtqetidfmnnkamvsyskev
nsqnhtqlnwvnhvaqhkeevlqlpifivqniqweisklvkrfahngqqetmrlh*ELVP
VSFYLSPKMTSDAPADPSQDVFFQNSIHSSPFGNCTKYYENTNNATCTACFDLPMDISPG
LYILQFF---

---*rtskrrktkrsrrtshkkketk**vs*iakrkrkrtnat*yrekscsrrvqkt*in
hfpiyyerw*igk*ilkcklgsifkegg*il*n*tntwkcfil*mcnwiqlfik*rqknp
qhqhfrf*rnhfkyss*plnqr*knstlnfirtih*fiiy**w*fiqyn*rstskil*k*
ilcyys

Frame C:
neknniifnsttciiiw*n*itfiyemcglgfwfkfmcsipkkl*il*ttrrwflipkr*
ihktipn*igsimwpstkkkffnyqsl*fktsngkfpswskdlptmaskkpcdcikswyp
lvstflqk*hqmlpqiqvkmysskiqsiqahletvqnimkiqimqhvlhvliyqwiflqv
yiffnfs---

---EELQREERQRDQEEQAIRRKRQNDEYLELQREKEREQMQRDIERKAAAEESRKHKST
IFQYIMRDGKLESEFSSASWGPYSKKEVEYYETRPILGNVLFFKCATGSNCLSSKGKRTL
NINILGFKEIISNTQVNLLTKGEKIPLSISLEPYIDSSFIDDGDSYNTISVPLQRFYRNE
FYAITL
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG407 (CFG407Q) /CSM/CF/CFG4-A/CFG407Q.Seq.d/                       1092   0.0
CFH358 (CFH358Q) /CSM/CF/CFH3-C/CFH358Q.Seq.d/                       1082   0.0
SFI679 (SFI679Q) /CSM/SF/SFI6-D/SFI679Q.Seq.d/                       1076   0.0
SFH429 (SFH429Q) /CSM/SF/SFH4-B/SFH429Q.Seq.d/                       1076   0.0
SFG847 (SFG847Q) /CSM/SF/SFG8-B/SFG847Q.Seq.d/                       1076   0.0
SFE718 (SFE718Q) /CSM/SF/SFE7-A/SFE718Q.Seq.d/                       1076   0.0
SFD893 (SFD893Q) /CSM/SF/SFD8-D/SFD893Q.Seq.d/                       1076   0.0
SFB309 (SFB309Q) /CSM/SF/SFB3-A/SFB309Q.Seq.d/                       1076   0.0
SFB148 (SFB148Q) /CSM/SF/SFB1-B/SFB148Q.Seq.d/                       1076   0.0
SFB106 (SFB106Q) /CSM/SF/SFB1-A/SFB106Q.Seq.d/                       1076   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    34   0.001  13
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    36   0.003  14
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    32   0.006  12
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           40   0.008  23
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    36   0.008  14
AC140987|AC140987.4 Rattus norvegicus clone CH230-237F12, WORKING DRAFT SEQUENCE, 30 unordered pieces.    36   0.014  11
AC106806|AC106806.2 Homo sapiens chromosome 5 clone RP11-510I6, complete sequence.    38   0.016  10
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   0.018  17
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   0.020  25
AC112596|AC112596.4 Rattus norvegicus clone CH230-45P12, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.023  10
dna update 2004. 1.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000500_224(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    43   0.022
AL844506_202(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    41   0.065
(Q04958) RecName: Full=Lysophospholipase NTE1;          EC=3.1.1...    34   7.9
protein update 2009. 5.14
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.13  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFG407 is cyt
5' end seq. ID CFG407F
5' end seq. 
>CFG407F.Seq
AAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATT
GAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCA
TACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGT
AAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGA
AGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGT
CAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACC
CGTTAGTTTCTACCTTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGA
TGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGA
AAATACAAATAATGCAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGG
TTTATATATTCTTCAATTTTTCTG----------
Length of 5' end seq. 564
3' end seq. ID CFG407Z
3' end seq. 
>CFG407Z.Seq
----------GTGAAGAACTTCAAAGAGAAGAAAGACAAAGAGATCAAGAAGAACAAGCC
ATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAATTGCAAAGAGAAAAAGAAAGAGAA
CAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCAGAAGAGTCCAGAAAACATAAATCA
ACCATTTTCCAATATATTATGAGAGATGGTAAATTGGAAAGTGAATTCTCAAGTGCAAGT
TGGGGTCCATATTCAAAGAAGGAGGTTGAATATTATGAAACTAGACCAATACTTGGAAAT
GTTTTATTCTTTAAATGTGCAACTGGATCCAATTGTTTATCAAGTAAAGGCAAAAGAACC
CTCAACATCAACATTTTAGGTTTTAAAGAAATCATTTCAAATACTCAAGTTAACCTCTTA
ACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTAGAACCATACATTGATTCATCATTT
ATTGATGATGGTGATTCATACAATACAATTAGCGTTCCACTTCAAAGATTCTATAGAAAT
GAATTCTATGCTATTACTCTAT
Length of 3' end seq. 552
Connected seq. ID CFG407P
Connected seq. 
>CFG407P.Seq
AAAATGAAAAAAATAATATTATTTTTAACAGTACTACTTGTATTATTATTTGGTAAAATT
GAATCACATTCATTTATGAAATGTGTGGATTGGGATTTTGGTTCAAATTCATGTGCAGCA
TACCCAAGAAACTATAGATTTTATGAACAACAAGGCGATGGTTTCTTATTCCAAAGAGGT
AAATTCACAAAACCATACCCAACTGAATTGGGTCAATCATGTGGCCCAGCACAAAGAAGA
AGTTCTTCAATTACCAATCTTTATAGTTCAAAACATCCAATGGGAAATTTCCAAGCTGGT
CAAAAGATTTGCCCACAATGGCCAGCAAGAAACCATGCGACTGCATTAAGAGCTGGTACC
CGTTAGTTTCTACCTTTCTCCAAAAATGACATCAGATGCTCCCGCAGATCCAAGTCAAGA
TGTATTCTTCCAAAATTCAATCCATTCAAGCCCATTTGGAAACTGTACAAAATATTATGA
AAATACAAATAATGCAACATGTACTGCATGTTTTGATTTACCAATGGATATTTCTCCAGG
TTTATATATTCTTCAATTTTTCTG----------GTGAAGAACTTCAAAGAGAAGAAAGA
CAAAGAGATCAAGAAGAACAAGCCATAAGAAGAAAGAGACAAAATGATGAGTATCTTGAA
TTGCAAAGAGAAAAAGAAAGAGAACAAATGCAACGTGATATAGAGAGAAAAGCTGCAGCA
GAAGAGTCCAGAAAACATAAATCAACCATTTTCCAATATATTATGAGAGATGGTAAATTG
GAAAGTGAATTCTCAAGTGCAAGTTGGGGTCCATATTCAAAGAAGGAGGTTGAATATTAT
GAAACTAGACCAATACTTGGAAATGTTTTATTCTTTAAATGTGCAACTGGATCCAATTGT
TTATCAAGTAAAGGCAAAAGAACCCTCAACATCAACATTTTAGGTTTTAAAGAAATCATT
TCAAATACTCAAGTTAACCTCTTAACCAAAGGTGAAAAAATTCCACTCTCAATTTCATTA
GAACCATACATTGATTCATCATTTATTGATGATGGTGATTCATACAATACAATTAGCGTT
CCACTTCAAAGATTCTATAGAAATGAATTCTATGCTATTACTCTAT
Length of connected seq. 1116
Full length Seq ID -
Full length Seq. -
Length of full length seq. -