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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG385
Library CF
(Link to library)
Clone ID CFG385
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFG385P
(Link to Original site)
Representative DNA sequence 
>CFG385 (CFG385Q) /CSM/CF/CFG3-D/CFG385Q.Seq.d/
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTTGAAAAAAAAAAXXXXXXXXXXGNT
GGTATGCAAATNTTTGTAAAGACCCTCACCGGTAAGATTATTACANTNAAAGTTGAAGGT
AGTGCCAACATTNAGAAATGTAAAAACAAAGATTCAAGATAAAGAAGGTNTTCCACCAGA
TCAACAACGTNTCATTTCGCTGGTAAACAATTANAAGATGGTGGTACTCTCTCTGATTAC
AATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATC
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCGAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAAGAAGGTATCCCACCAGATCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lyky*ihilffyil*HFIKKKKKKKXKKXPFLKKK---

---XGMQXFVKTLTGKIITXKVEGSANIXKCKNKDSR*rrxstrsttxhfagkqlxdggt
lsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippd
qqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdni
envkakiqdkegippdqqrlifagkqledgrtlsdynirkestlhlvlrlrggmqifvkt
ltgktitlevegsdnienvktkiqdkegippd
Translated Amino Acid sequence (All Frames) 
Frame A:
iiqilnsyfiflyivtfhkkkkkkkx*kxpffekk---

---XGMQXFVKTLTGKIITXKVEGSANIXKCKNKDSR*rrxstrsttxhfagkqlxdggt
lsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegippd
qqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdni
envkakiqdkegippdqqrlifagkqledgrtlsdynirkestlhlvlrlrggmqifvkt
ltgktitlevegsdnienvktkiqdkegippd

Frame B:
lyky*ihilffyil*HFIKKKKKKKXKKXPFLKKK---

---xvckxl*rpspvrllxxklkvvptxrnvktkiqdkegxppdqqrxislvnnxkmvvl
slitiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshqt
nkd*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitl
rmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfernplsi*fsd*evvckfl*kl
slvkplhsklkvvttlrm*kqkfktkkvshqi

Frame C:
ytnikfifyffiycnis*kkkkkkxlkxplf*kkk---

---wyanxckdphr*dyyxxs*r*cqhxem*kqrfkikkvfhqinnvsfrw*tixrwwys
l*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptrp
tkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*
ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfckns
hw*nhytrs*r**qh*ecknknsrqrryptrs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG385 (CFG385Q) /CSM/CF/CFG3-D/CFG385Q.Seq.d/                       1558   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1473   0.0
CFG260 (CFG260Q) /CSM/CF/CFG2-C/CFG260Q.Seq.d/                       1439   0.0
CHB384 (CHB384Q) /CSM/CH/CHB3-D/CHB384Q.Seq.d/                       1433   0.0
CHC282 (CHC282Q) /CSM/CH/CHC2-D/CHC282Q.Seq.d/                       1425   0.0
CFA841 (CFA841Q) /CSM/CF/CFA8-B/CFA841Q.Seq.d/                       1425   0.0
CFK312 (CFK312Q) /CSM/CF/CFK3-A/CFK312Q.Seq.d/                       1421   0.0
AFG624 (AFG624Q) /CSM/AF/AFG6-A/AFG624Q.Seq.d/                       1415   0.0
CFC756 (CFC756Q) /CSM/CF/CFC7-C/CFC756Q.Seq.d/                       1411   0.0
CFC508 (CFC508Q) /CSM/CF/CFC5-A/CFC508Q.Seq.d/                       1411   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1302   0.0    4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1287   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1287   0.0    4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   763   0.0    5
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   680   0.0    4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   607   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   664   0.0    3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   607   0.0    3
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   176   e-102  6
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-101  5
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   460   e-128
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   460   e-128
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   460   e-128
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   456   e-127
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   440   e-122
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   438   e-121
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   437   e-121
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   437   e-121
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   437   e-121
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   436   e-121
protein update 2009. 5.14
PSORT 

 psg: 0.55  gvh: 0.34  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.64  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFG385 is nuc
5' end seq. ID CFG385F
5' end seq. 
>CFG385F.Seq
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTTGAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID CFG385Z
3' end seq. 
>CFG385Z.Seq
----------GNTGGTATGCAAATNTTTGTAAAGACCCTCACCGGTAAGATTATTACANT
NAAAGTTGAAGGTAGTGCCAACATTNAGAAATGTAAAAACAAAGATTCAAGATAAAGAAG
GTNTTCCACCAGATCAACAACGTNTCATTTCGCTGGTAAACAATTANAAGATGGTGGTAC
TCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGG
TGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGG
CTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGA
CCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTA
CAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAAT
TTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACAT
TGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCT
CATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCGAAA
GGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAAC
TCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAA
AACAAAAATTCAAGACAAAGAAGGTATCCCACCAGATCA
Length of 3' end seq. 809
Connected seq. ID CFG385P
Connected seq. 
>CFG385P.Seq
ATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACATTTCATAAAAAA
AAAAAAAAAAAAAAAANTTAAAAAANCCCCTTTTTTGAAAAAAAAAA----------GNT
GGTATGCAAATNTTTGTAAAGACCCTCACCGGTAAGATTATTACANTNAAAGTTGAAGGT
AGTGCCAACATTNAGAAATGTAAAAACAAAGATTCAAGATAAAGAAGGTNTTCCACCAGA
TCAACAACGTNTCATTTCGCTGGTAAACAATTANAAGATGGTGGTACTCTCTCTGATTAC
AATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATC
TTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGATAATATT
GAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACAAAGATTA
ATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAG
GAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACC
CTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAA
GCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGT
AAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCGAAAGGAATCCACTCTC
CATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAA
ACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAA
GACAAAGAAGGTATCCCACCAGATCA
Length of connected seq. 916
Full length Seq ID -
Full length Seq. -
Length of full length seq. -