CFG375
Library CF
(Link to library)
Clone ID CFG375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14959-1
Original site URL
Representative seq. ID CFG375Z
(Link to Original site)
Representative DNA sequence
>CFG375 (CFG375Q) /CSM/CF/CFG3-D/CFG375Q.Seq.d/
XXXXXXXXXXCCNCCTCTTCACCTTCCTCCACCAACCAATGAATATTCACACATTTTACC
AATTACAACTACACAATCACCACTCTCTACNGGCTCAAATGGTGGCTCACTACAACAACA
ACAACAACAACAACAACAACAACAGCAACAACCACAACAACAACAGCAACAACAAACACC
ACAAATAATACCACAACCATCAGAAAATGGTGGAAATGTATCAACAATTGGTGAAAAGAG
AGTTAGAGATGATGAAACAATAACTTCCGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---PLHLPPPTNEYSHILPITTTQSPLSTGSNGGSLQQQQQQQQQQQQQPQQQQQQQTPQ
IIPQPSENGGNVSTIGEKRVRDDETITSD


Translated Amino Acid sequence (All Frames)
Frame A:
---xlftflhqpmnihtfyqlqlhnhhslxaqmvahynnnnnnnnnnsnnhnnnsnnkhh
k*yhnhqkmvemyqqlvkrelemmkq*lp


Frame B:
---xsspsstnq*ifthftnynytittlyxlkwwlttttttttttttattttttattntt
nntttirkwwkcinnw*kes*r**nnnfr


Frame C:
---PLHLPPPTNEYSHILPITTTQSPLSTGSNGGSLQQQQQQQQQQQQQPQQQQQQQTPQ
IIPQPSENGGNVSTIGEKRVRDDETITSD


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFL179 (VFL179Q) /CSM/VF/VFL1-D/VFL179Q.Seq.d/ 188 3e-47
VFI737 (VFI737Q) /CSM/VF/VFI7-B/VFI737Q.Seq.d/ 188 3e-47
VFC314 (VFC314Q) /CSM/VF/VFC3-A/VFC314Q.Seq.d/ 188 3e-47
SLG747 (SLG747Q) /CSM/SL/SLG7-B/SLG747Q.Seq.d/ 188 3e-47
SLG201 (SLG201Q) /CSM/SL/SLG2-A/SLG201Q.Seq.d/ 188 3e-47
SLF312 (SLF312Q) /CSM/SL/SLF3-A/SLF312Q.Seq.d/ 188 3e-47
SLA835 (SLA835Q) /CSM/SL/SLA8-B/SLA835Q.Seq.d/ 188 3e-47
SFG340 (SFG340Q) /CSM/SF/SFG3-B/SFG340Q.Seq.d/ 188 3e-47
SFC691 (SFC691Q) /CSM/SF/SFC6-D/SFC691Q.Seq.d/ 188 3e-47
SFC378 (SFC378Q) /CSM/SF/SFC3-D/SFC378Q.Seq.d/ 188 3e-47

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CG206173|CG206173.1 PUFNO50TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa0691I03,genomic survey sequence. 48 0.061 1
BX435635|BX435635.1 human full-length cDNA 3-PRIME end of clone CS0DF034YM12 of FETAL BRAIN of Homo sapiens (human). 30 2.2 3
AL133551|AL133551.13 Human DNA sequence from clone RP11-57G10 on chromosome 10 Contains a J-domain containing protein (JDP1) isoform B, the SIRT1 gene (Sir2-like proteins (siruitins) type 1), part of a novel gene similar to KIAA0032, two ribosomal pseudogenes, 2 CpG islands, ESTs, STSs and GSSs. 42 3.8 1
BQ861944|BQ861944.1 QGC1a03.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC1a03, mRNA sequence. 42 3.8 1
BQ863468|BQ863468.1 QGC23P11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC23P11, mRNA sequence. 42 3.8 1
BQ861821|BQ861821.1 QGC19K21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC19K21, mRNA sequence. 42 3.8 1
CG431724|CG431724.1 Bg138-T3 Glomus intraradices Bgl II library (in pBK-CMV stratagene) Glomus intraradices genomic clone Bg138-T3, genomic survey sequence. 42 3.8 1
BQ866810|BQ866810.1 QGC9A02.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC9A02, mRNA sequence. 42 3.8 1
BQ866126|BQ866126.1 QGC7B23.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC7B23, mRNA sequence. 42 3.8 1
BQ862687|BQ862687.1 QGC21M11.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC21M11, mRNA sequence. 42 3.8 1
dna update 2004. 1.29
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 265,394,862
protein update 2009. 5.14
PSORT

psg: 0.75 gvh: 0.47 alm: 0.60 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
8.0 %: vacuolar

>> prediction for CFG375 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFG375Z
3' end seq.
>CFG375Z.Seq
----------CCNCCTCTTCACCTTCCTCCACCAACCAATGAATATTCACACATTTTACC
AATTACAACTACACAATCACCACTCTCTACNGGCTCAAATGGTGGCTCACTACAACAACA
ACAACAACAACAACAACAACAACAGCAACAACCACAACAACAACAGCAACAACAAACACC
ACAAATAATACCACAACCATCAGAAAATGGTGGAAATGTATCAACAATTGGTGAAAAGAG
AGTTAGAGATGATGAAACAATAACTTCCGAT
Length of 3' end seq. 261
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -