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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG370
Library CF
(Link to library)
Clone ID CFG370
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFG370P
(Link to Original site)
Representative DNA sequence 
>CFG370 (CFG370Q) /CSM/CF/CFG3-C/CFG370Q.Seq.d/
ATTTTTTTTTCAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAA
AAAAAAAAXXXXXXXXXXTCTTANATTAAAGGTGGATGCAATNTTGTAAGACCNCNCCGG
TAANATTATTACATTGAAGTGAAGGTAGTGACANCCTTNAGAATGTAAAACAAAGATTCA
AGATAAAGAAGGTATTCCNCCAGATCAACAACGTNTCATTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCANCTCTCCACTTGGTCCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTT
GAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGT
ATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGT
TCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATT
GAGAATGTAAAAACAAAAATTCAAGACNAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
FFFQFIFIIQILNSYFIFLYIVTFHKKKKKKKXKXSXFLKKK---

---SXIKGGCNXVRPXR*xyyievkvvtxxrm*nkdsr*rrysxrsttxhfagkqledgr
tlsdyniqkesxlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegipp
dqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdn
ienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvk
tltgktitlevegsdnienvktkiqdx
Translated Amino Acid sequence (All Frames) 
Frame A:
iffsihfyytnikfifyffiycnis*kkkkkkx*kxxffekk---

---SXIKGGCNXVRPXR*xyyievkvvtxxrm*nkdsr*rrysxrsttxhfagkqledgr
tlsdyniqkesxlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegipp
dqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdn
ienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvk
tltgktitlevegsdnienvktkiqdx

Frame B:
FFFQFIFIIQILNSYFIFLYIVTFHKKKKKKKXKXSXFLKKK---

---lxlkvdaxl*dxxgxiitlk*r**xpxecktkiqdkegippdqqrxislvnn*kmvv
lslitiskknxlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvshq
tnkd*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlit
lrmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*k
lslvkplhsklkvvttlrm*kqkfkt

Frame C:
fffnsfllyky*ihilffyil*hfikkkkkkxlkxxlf*kkk---

---lx*rwmqxcktxpvxllh*segsdxlxnvkqrfkikkvfxqinnvsfrw*tirrwsy
sl*lqypkrixsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryptr
ptkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h
*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfckn
shw*nhytrs*r**qh*ecknknsrx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG370 (CFG370Q) /CSM/CF/CFG3-C/CFG370Q.Seq.d/                       1505   0.0
CFG260 (CFG260Q) /CSM/CF/CFG2-C/CFG260Q.Seq.d/                       1396   0.0
CFF682 (CFF682Q) /CSM/CF/CFF6-D/CFF682Q.Seq.d/                       1396   0.0
CFC508 (CFC508Q) /CSM/CF/CFC5-A/CFC508Q.Seq.d/                       1390   0.0
CFJ754 (CFJ754Q) /CSM/CF/CFJ7-C/CFJ754Q.Seq.d/                       1388   0.0
CFJ515 (CFJ515Q) /CSM/CF/CFJ5-A/CFJ515Q.Seq.d/                       1384   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1384   0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/                       1380   0.0
AFG584 (AFG584Q) /CSM/AF/AFG5-D/AFG584Q.Seq.d/                       1380   0.0
CHD734 (CHD734Q) /CSM/CH/CHD7-B/CHD734Q.Seq.d/                       1378   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1273   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1257   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1257   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   743   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   656   0.0    3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   622   0.0    2
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   622   0.0    2
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   644   0.0    3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-104  5
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   192   e-101  5
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   419   e-120
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   419   e-120
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   419   e-120
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   415   e-119
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   403   e-116
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   401   e-115
AM270080_13(AM270080|pid:none) Aspergillus niger contig An04c019...   400   e-115
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   401   e-114
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   401   e-114
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   401   e-114
protein update 2009. 5.14
PSORT 

 psg: 0.97  gvh: 0.34  alm: 0.26  top: 1.03  tms: 0.07  mit: 0.44  mip: 0.00
 nuc: 0.50  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFG370 is nuc
5' end seq. ID CFG370F
5' end seq. 
>CFG370F.Seq
ATTTTTTTTTCAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAA
AAAAAAAA----------
Length of 5' end seq. 128
3' end seq. ID CFG370Z
3' end seq. 
>CFG370Z.Seq
----------TCTTANATTAAAGGTGGATGCAATNTTGTAAGACCNCNCCGGTAANATTA
TTACATTGAAGTGAAGGTAGTGACANCCTTNAGAATGTAAAACAAAGATTCAAGATAAAG
AAGGTATTCCNCCAGATCAACAACGTNTCATTTCGCTGGTAAACAATTAGAAGATGGTCG
TACTCTCTCTGATTACAATATCCAAAAAGAATCANCTCTCCACTTGGTCCTCAGATTAAG
AGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGA
GGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCCCACC
AGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGA
TTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCA
AATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAA
CATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACG
TCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCA
AAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAA
AACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGT
AAAAACAAAAATTCAAGACNAA
Length of 3' end seq. 792
Connected seq. ID CFG370P
Connected seq. 
>CFG370P.Seq
ATTTTTTTTTCAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATA
TATTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAANTTAAAAANTCNNCTTTTTTGAA
AAAAAAAA----------TCTTANATTAAAGGTGGATGCAATNTTGTAAGACCNCNCCGG
TAANATTATTACATTGAAGTGAAGGTAGTGACANCCTTNAGAATGTAAAACAAAGATTCA
AGATAAAGAAGGTATTCCNCCAGATCAACAACGTNTCATTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCANCTCTCCACTTGGTCCTC
AGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTT
GAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGT
ATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGT
TCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGAT
CAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTAC
AACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATT
TTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATT
GAGAATGTAAAAACAAAAATTCAAGACNAA
Length of connected seq. 920
Full length Seq ID -
Full length Seq. -
Length of full length seq. -