>CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/
GAAAAATCCCAAGTTGCCTTTATAGCAGGTAGTAGTTCTGATATTCATTCAACTACTGTT
GCAAGATTGTNTGAAGGTAGACAAGGAANATGGGAATTTATGGCCGNCGGTATTGTTTNT
GTTGTTTCAAATCGNGTAGATAAAACAAATTATNTCAAAGTTTTCGATTTAAAGGCCANC
TACAGAATCATTTTTGAACAANAAATTTATGACNCTTTTGAATTTCAAAAACAAAGANAT
TTNTTTTTTGCATTTGAAGGGGATTCCTGGGTTTATGGCTTATCATTTGCTGATGTAACT
GAAGCAGCTGAATTNTATGGCCAACTTTTAAATTGTAAACAAGGAAATATTGGTAAAACT
GCTGCAATTAATCCAAATACTTNTTCAACCAAAATTACTGCATCAACACCAGCACCAAAA
GTTGAAAAGAAAAAAGAAAAGXXXXXXXXXXANGNGNTCCNNCNCCNCCNCCNCCATNCC
ATAANANNCCTNCAGCTCCNCCATCAGNCGGAGGTGCTCCACCACCACCACCACCTCCAC
CACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCAT
CAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTG
GTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTA
ATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTG
GTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATNAATGGTCAGATTATTAAA
TTATTCTTTAACAAAATTCAAATTCAAAAAAATCATNAATAAAGATT

EKSQVAFIAGSSSDIHSTTVARLXEGRQGXWEFMAXGIVXVVSNRVDKTNYXKVFDLKAX
YRIIFEQXIYDXFEFQKQRXXFFAFEGDSWVYGLSFADVTEAAEXYGQLLNCKQGNIGKT
AAINPNTXSTKITASTPAPKVEKKKEK---

---XXPXPPPPXHXXPXAPPSXGGAPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASG
GGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEE
DDDDDDXWSDY*iil*qnsnskksxiki

Frame A:
EKSQVAFIAGSSSDIHSTTVARLXEGRQGXWEFMAXGIVXVVSNRVDKTNYXKVFDLKAX
YRIIFEQXIYDXFEFQKQRXXFFAFEGDSWVYGLSFADVTEAAEXYGQLLNCKQGNIGKT
AAINPNTXSTKITASTPAPKVEKKKEK---

---xxsxxxxxxp*xxxssxixrrcstttttstttf*wsttstttngqcssiirrwwcqr
rwkk*sfgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*rwyerr**r
r***r*xmvrllnysltkfkfkkixnkd

Frame B:
knpklpl*qvvvlifiqlllqdcxkvdkexgnlwpxvlfxlfqix*ikqixskfsi*rpx
tesflnxkfmtllnfknkxixflhlkgipgfmayhllm*lkqlnxmanf*ivnkeilvkl
lqliqilxqpkllhqhqhqklkrkkk---

---XXPXPPPPXHXXPXAPPSXGGAPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASG
GGRNDLLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEE
DDDDDDXWSDY*iil*qnsnskksxiki

Frame C:
kipsclysr**f*ysfnycckiv*r*trxmgiygrrycxccfksxr*nklxqsfrfkgxl
qnhf*txnl*xf*isktkxfxfci*rgflglwliic*cn*ss*ixwptfkl*trkyw*nc
cn*skyxfnqnycintstks*kekrk---

---xxxxxxxhxixxlqlxhqxevlhhhhhlhhhllvvhhlhhhqwpvllhhqevvvpaa
veemifwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkk
mmmtmxngqiiklffnkiqiqknhx*r

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG349 (CFG349Q) /CSM/CF/CFG3-C/CFG349Q.Seq.d/                        694   0.0
AFG687 (AFG687Q) /CSM/AF/AFG6-D/AFG687Q.Seq.d/                        682   0.0
SSL103 (SSL103Q) /CSM/SS/SSL1-A/SSL103Q.Seq.d/                        678   0.0
VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        404   e-112
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        404   e-112
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        404   e-112
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        404   e-112
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        404   e-112
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        404   e-112
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        404   e-112

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   404   0.0    6
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence.    50   0.054  1
AC090416|AC090416.1 Caenorhabditis briggsae cosmid CB042D07, complete sequence.    44   0.14   5
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.    46   0.60   3
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence.    46   0.84   1
AC130803|AC130803.19 Medicago truncatula clone mth2-10g3, WORKING DRAFT SEQUENCE, 5 ordered pieces.    36   3.0    5
AC133750|AC133750.2 Homo sapiens 3 BAC RP11-619K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   3.2    2
AC133689|AC133689.3 Rattus norvegicus clone CH230-211B12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   3.3    7
X75304|X75304.1 H.sapiens giantin mRNA.                            44   3.3    1
D25542|D25542.1 Human mRNA for golgi antigen gcp372, complete cds.    44   3.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...   247   4e-64
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    57   1e-06
CR380953_413(CR380953|pid:none) Candida glabrata strain CBS138 c...    52   3e-05
BC066424_1(BC066424|pid:none) Danio rerio Wiskott-Aldrich syndro...    50   1e-04
BC087802_1(BC087802|pid:none) Xenopus tropicalis Wiskott-Aldrich...    49   3e-04
(Q12446) RecName: Full=Proline-rich protein LAS17;  &AX167565_1(...    49   3e-04
BC158507_1(BC158507|pid:none) Xenopus tropicalis Wiskott-Aldrich...    49   3e-04
BC070812_1(BC070812|pid:none) Xenopus laevis hypothetical protei...    46   0.002
BC129739_1(BC129739|pid:none) Xenopus laevis hypothetical protei...    45   0.002
AE016820_654(AE016820|pid:none) Ashbya gossypii (= Eremothecium ...    45   0.003

 psg: 0.91  gvh: 0.52  alm: 0.47  top: 0.50  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFG349 is cyt

>CFG349F.Seq
GAAAAATCCCAAGTTGCCTTTATAGCAGGTAGTAGTTCTGATATTCATTCAACTACTGTT
GCAAGATTGTNTGAAGGTAGACAAGGAANATGGGAATTTATGGCCGNCGGTATTGTTTNT
GTTGTTTCAAATCGNGTAGATAAAACAAATTATNTCAAAGTTTTCGATTTAAAGGCCANC
TACAGAATCATTTTTGAACAANAAATTTATGACNCTTTTGAATTTCAAAAACAAAGANAT
TTNTTTTTTGCATTTGAAGGGGATTCCTGGGTTTATGGCTTATCATTTGCTGATGTAACT
GAAGCAGCTGAATTNTATGGCCAACTTTTAAATTGTAAACAAGGAAATATTGGTAAAACT
GCTGCAATTAATCCAAATACTTNTTCAACCAAAATTACTGCATCAACACCAGCACCAAAA
GTTGAAAAGAAAAAAGAAAAG----------

>CFG349Z.Seq
----------ANGNGNTCCNNCNCCNCCNCCNCCATNCCATAANANNCCTNCAGCTCCNC
CATCAGNCGGAGGTGCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCAC
CACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCG
GCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTG
ATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAG
CTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAG
AAGATGATGATGACGATGATNAATGGTCAGATTATTAAATTATTCTTTAACAAAATTCAA
ATTCAAAAAAATCATNAATAAAGATT

>CFG349P.Seq
GAAAAATCCCAAGTTGCCTTTATAGCAGGTAGTAGTTCTGATATTCATTCAACTACTGTT
GCAAGATTGTNTGAAGGTAGACAAGGAANATGGGAATTTATGGCCGNCGGTATTGTTTNT
GTTGTTTCAAATCGNGTAGATAAAACAAATTATNTCAAAGTTTTCGATTTAAAGGCCANC
TACAGAATCATTTTTGAACAANAAATTTATGACNCTTTTGAATTTCAAAAACAAAGANAT
TTNTTTTTTGCATTTGAAGGGGATTCCTGGGTTTATGGCTTATCATTTGCTGATGTAACT
GAAGCAGCTGAATTNTATGGCCAACTTTTAAATTGTAAACAAGGAAATATTGGTAAAACT
GCTGCAATTAATCCAAATACTTNTTCAACCAAAATTACTGCATCAACACCAGCACCAAAA
GTTGAAAAGAAAAAAGAAAAG----------ANGNGNTCCNNCNCCNCCNCCNCCATNCC
ATAANANNCCTNCAGCTCCNCCATCAGNCGGAGGTGCTCCACCACCACCACCACCTCCAC
CACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCAT
CAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTG
GTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTA
ATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTG
GTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATNAATGGTCAGATTATTAAA
TTATTCTTTAACAAAATTCAAATTCAAAAAAATCATNAATAAAGATT