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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG348
Library CF
(Link to library)
Clone ID CFG348
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15645-1
Original site URL
Representative seq. ID CFG348P
(Link to Original site)
Representative DNA sequence 
>CFG348 (CFG348Q) /CSM/CF/CFG3-B/CFG348Q.Seq.d/
ATTTCACTTTTACTTAAATAATTTCCAAAATGTCAGAAACTACACCAGTTCCTGTTGGCG
AAGCAGGTGAAAAAAGTGCTACAGCATTAAAAAAAGAACAAAAGAAATTAGAAAAAGAGA
AAAAGATAGCAGAAGCTAAAGCAAAGAAAGCCGCTGAGAAATCAGCAGCAAGTGGTAATA
GTGGTGAACAAAAGAATGAAAAGAAACAAGAACAAGTTGAAGAGAATAATAGTAATTGGG
GTGAATTACCAATGAATCAAAGTAAAGAAAAGATTACAAGAGAATGGACAGATGTATCAC
AATTGACAGAATCATTAGTTGGTAAATCAGTATTAATTCGTGCACGTCTTTCAACAAGTC
GTTTACAAGGTGCCAATCTTTGTTTTGTACAATTAAGAGATGGTTTATATACAGTTCAAG
CAGTTGTTGCCAAAGGTGGATCCAACTCGAAATCAATGGTGCAATTTGTTGGACAAGTTC
CAAAGGAATCCATTGTTGACGTTCAAGCAACCCGTTGTCTCAACCAGTGTACCAATTGAA
AGTTGTACACAAAAATCCGTAGAATTACAAGTTTCATCATTTTTCATCGTATCAAAATCA
ACATTACTCCCATTACAAATTGAAGAXXXXXXXXXXATTTCAATAAGGTCTTTGAAATTG
GTCCAGTTTTCCGTGCTGAAAACTCCAATACTCATCGTCATTTGACCGAGTTTGTTGGTC
TCGATCTTGAAATGACCTTTAAGGATCATTATCATGAGGCTTTGGATACTTTGGATCGTT
TAATGACCTCGATTTTCCGTGGTTTAGAGACTCGTTTCGCAAAGGAAATCGAATCTGTAA
ACACTCAATACCCATTCGAACCTTTCAAATTCACTTATCCATCACCACGTTTCACCTTTG
ATGAAGCCGCTGCTATGTTGGCCGAATTAAATGACCCAGATTACATTGTAAAAGACAATG
ATTTCAATACTCGTCAAGAGAAACGTTTAGGTAAAATCATCAAAGAGAAATTTGGTGTAG
ATTTCTTTATCGTCGATAAATTCCACGTTGAAGTTCGTCCATTCTATACCATGCCTGATC
CAAATAATCCACAATGGGCAAATGCTTACGATCTCTTTATGAGAGGTGAAGAAATTTGTT
CTGGTGCTCAACGTATTCATGATCCAGAATTACTCGAAAAGAGTGCTAAATCTCATGGTG
TTGTTATTGAGGATATTCAAGGTTATATCGATTCCTTTAAATATGGTTGTTCACAACATG
CTGGTGGTGGTGTTGGTTTAGAACGTGTAGTTATGCTTTATTTAGGTTTAGGTAATATTA
GAAAAGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
islllk*fpkcqklhqfllakqvkkvlqh*kknkrn*kkrkr*qklkqrkplrnqqqvvi
vvnkrmkrnknklkriivigvnyq*ikvkkrlqengqmyhn*qnh*lvnqy*fvhvfqqv
vykvpifvlyn*EMVYIQFKQLLPKVDPTRNQWCNLLDKFQRNPLLTFKQPVVSTSVPIE
SCTQKSVELQVSSFFIVSKSTLLPLQIE---

---FNKVFEIGPVFRAENSNTHRHLTEFVGLDLEMTFKDHYHEALDTLDRLMTSIFRGLE
TRFAKEIESVNTQYPFEPFKFTYPSPRFTFDEAAAMLAELNDPDYIVKDNDFNTRQEKRL
GKIIKEKFGVDFFIVDKFHVEVRPFYTMPDPNNPQWANAYDLFMRGEEICSGAQRIHDPE
LLEKSAKSHGVVIEDIQGYIDSFKYGCSQHAGGGVGLERVVMLYLGLGNIRK
Translated Amino Acid sequence (All Frames) 
Frame A:
islllk*fpkcqklhqfllakqvkkvlqh*kknkrn*kkrkr*qklkqrkplrnqqqvvi
vvnkrmkrnknklkriivigvnyq*ikvkkrlqengqmyhn*qnh*lvnqy*fvhvfqqv
vykvpifvlyn*EMVYIQFKQLLPKVDPTRNQWCNLLDKFQRNPLLTFKQPVVSTSVPIE
SCTQKSVELQVSSFFIVSKSTLLPLQIE---

---isirslklvqfsvlktpilivi*psllvsilk*plriiimrlwilwiv**prfsvv*
rlvsqrksnl*tlnthsnlsnslihhhvsplmkpllcwpn*mtqitl*ktmisilvkrnv
*vksskrnlv*islssinstlkfvhsipcliqiihngqmltisl*evkkfvlvlnvfmiq
nyskrvlnlmvlllrifkvisiplnmvvhnmlvvvlv*nv*lcfi*v*vilek

Frame B:
fhfylnnfqnvrnytsscwrsr*kkcysikkrtkeirkrekdsrs*skesr*eisskw**
w*tke*ketrts*re***lg*itnesk*rkdykrmdrcitidriisw*isinsctsfnks
ftrcqslfctikrwfiyssssccqrwiqleingaicwtsskgihc*rssnplsqpvyqlk
vvhknp*nykfhhfssyqnqhyshyklk---

---fq*gl*nwssfpc*klqysssfdrvcwsrs*ndl*gsls*gfgyfgsfndldfpwfr
dsfrkgnrickhsipirtfqihlsittfhl**srcyvgrik*prlhckrq*fqyssretf
r*nhqreiwcrflyrr*ipr*sssilyha*sk*stmgkclrslyer*rnlfwcstys*sr
itrkec*iswccy*gysrlyrfl*iwlfttcwwwcwfrtcsyalfrfr*y*ks

Frame C:
ftft*iiskmsettpvpvgeageksatalkkeqkklekekkiaeakakkaaeksaasgns
geqknekkqeqveennsnwgelpmnqskekitrewtdvsqlteslvgksvlirarlstsr
lqganlcfvqlrdglytvqavvakggsnsksmvqfvgqvpkesivdvqatrclnqctn*k
lytkirritsfiifhrikinitpitn*r---

---FNKVFEIGPVFRAENSNTHRHLTEFVGLDLEMTFKDHYHEALDTLDRLMTSIFRGLE
TRFAKEIESVNTQYPFEPFKFTYPSPRFTFDEAAAMLAELNDPDYIVKDNDFNTRQEKRL
GKIIKEKFGVDFFIVDKFHVEVRPFYTMPDPNNPQWANAYDLFMRGEEICSGAQRIHDPE
LLEKSAKSHGVVIEDIQGYIDSFKYGCSQHAGGGVGLERVVMLYLGLGNIRK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG348 (CFG348Q) /CSM/CF/CFG3-B/CFG348Q.Seq.d/                       2274   0.0
VFB754 (VFB754Q) /CSM/VF/VFB7-C/VFB754Q.Seq.d/                       1370   0.0
SLE669 (SLE669Q) /CSM/SL/SLE6-C/SLE669Q.Seq.d/                       1364   0.0
SFC292 (SFC292Q) /CSM/SF/SFC2-D/SFC292Q.Seq.d/                       1316   0.0
AFN545 (AFN545Q) /CSM/AF/AFN5-B/AFN545Q.Seq.d/                       1316   0.0
AFM449 (AFM449Q) /CSM/AF/AFM4-C/AFM449Q.Seq.d/                       1314   0.0
SFI825 (SFI825Q) /CSM/SF/SFI8-B/SFI825Q.Seq.d/                       1306   0.0
CFJ701 (CFJ701Q) /CSM/CF/CFJ7-A/CFJ701Q.Seq.d/                       1302   0.0
AFJ659 (AFJ659Q) /CSM/AF/AFJ6-C/AFJ659Q.Seq.d/                       1298   0.0
AFF105 (AFF105Q) /CSM/AF/AFF1-A/AFF105Q.Seq.d/                       1296   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1370   0.0    12
AX489090|AX489090.1 Sequence 6390 from Patent WO02053728.          90   4e-31  3
BG736765|BG736765.1 rk62b01.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to SW:SYD_CAEEL Q03577 PROBABLE ASPARTYL-TRNA SYNTHETASE ;, mRNA sequence.    64   2e-19  3
AL396903|AL396903.1 T7 end of clone XAR0AA001D11 of library XAR0AA from strain CBS 732  of Zygosaccharomyces rouxii.    72   3e-18  3
AL031579|AL031579.1 S.pombe chromosome III cosmid c1223.           58   2e-13  7
AF113612|AF113612.1 Drosophila melanogaster aspartyl tRNA synthetase (l(2)49Db) mRNA, complete cds.    52   1e-10  4
AY070532|AY070532.1 Drosophila melanogaster GM14334 full length cDNA.    52   1e-10  4
Y12709|Y12709.1 S.pombe tea1p gene.                                58   1e-10  3
BC042227|BC042227.1 Xenopus laevis, Similar to aspartyl-tRNA synthetase, clone MGC:53970 IMAGE:5570927, mRNA, complete cds.    52   2e-09  2
Z19152|Z19152.1 Caenorhabditis elegans cosmid B0464.               60   2e-08  5
dna update 2004. 1.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q75JQ1) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic 1; ...   474   e-132
AJ720378_1(AJ720378|pid:none) Gallus gallus mRNA for hypothetica...   283   9e-75
BC107749_1(BC107749|pid:none) Homo sapiens aspartyl-tRNA synthet...   282   2e-74
AK222476_1(AK222476|pid:none) Homo sapiens mRNA for aspartyl-tRN...   282   2e-74
(P14868) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic;   ...   282   2e-74
AY891847_1(AY891847|pid:none) Synthetic construct Homo sapiens c...   282   2e-74
AY762100_1(AY762100|pid:none) Homo sapiens cell proliferation-in...   281   3e-74
AB171471_1(AB171471|pid:none) Macaca fascicularis brain cDNA clo...   280   6e-74
(P15178) RecName: Full=Aspartyl-tRNA synthetase, cytoplasmic;   ...   279   1e-73
AB171146_1(AB171146|pid:none) Macaca fascicularis brain cDNA clo...   279   2e-73
protein update 2009. 5.14
PSORT 

 psg: 0.61  gvh: 0.39  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFG348 is cyt
5' end seq. ID CFG348F
5' end seq. 
>CFG348F.Seq
ATTTCACTTTTACTTAAATAATTTCCAAAATGTCAGAAACTACACCAGTTCCTGTTGGCG
AAGCAGGTGAAAAAAGTGCTACAGCATTAAAAAAAGAACAAAAGAAATTAGAAAAAGAGA
AAAAGATAGCAGAAGCTAAAGCAAAGAAAGCCGCTGAGAAATCAGCAGCAAGTGGTAATA
GTGGTGAACAAAAGAATGAAAAGAAACAAGAACAAGTTGAAGAGAATAATAGTAATTGGG
GTGAATTACCAATGAATCAAAGTAAAGAAAAGATTACAAGAGAATGGACAGATGTATCAC
AATTGACAGAATCATTAGTTGGTAAATCAGTATTAATTCGTGCACGTCTTTCAACAAGTC
GTTTACAAGGTGCCAATCTTTGTTTTGTACAATTAAGAGATGGTTTATATACAGTTCAAG
CAGTTGTTGCCAAAGGTGGATCCAACTCGAAATCAATGGTGCAATTTGTTGGACAAGTTC
CAAAGGAATCCATTGTTGACGTTCAAGCAACCCGTTGTCTCAACCAGTGTACCAATTGAA
AGTTGTACACAAAAATCCGTAGAATTACAAGTTTCATCATTTTTCATCGTATCAAAATCA
ACATTACTCCCATTACAAATTGAAGA----------
Length of 5' end seq. 626
3' end seq. ID CFG348Z
3' end seq. 
>CFG348Z.Seq
----------ATTTCAATAAGGTCTTTGAAATTGGTCCAGTTTTCCGTGCTGAAAACTCC
AATACTCATCGTCATTTGACCGAGTTTGTTGGTCTCGATCTTGAAATGACCTTTAAGGAT
CATTATCATGAGGCTTTGGATACTTTGGATCGTTTAATGACCTCGATTTTCCGTGGTTTA
GAGACTCGTTTCGCAAAGGAAATCGAATCTGTAAACACTCAATACCCATTCGAACCTTTC
AAATTCACTTATCCATCACCACGTTTCACCTTTGATGAAGCCGCTGCTATGTTGGCCGAA
TTAAATGACCCAGATTACATTGTAAAAGACAATGATTTCAATACTCGTCAAGAGAAACGT
TTAGGTAAAATCATCAAAGAGAAATTTGGTGTAGATTTCTTTATCGTCGATAAATTCCAC
GTTGAAGTTCGTCCATTCTATACCATGCCTGATCCAAATAATCCACAATGGGCAAATGCT
TACGATCTCTTTATGAGAGGTGAAGAAATTTGTTCTGGTGCTCAACGTATTCATGATCCA
GAATTACTCGAAAAGAGTGCTAAATCTCATGGTGTTGTTATTGAGGATATTCAAGGTTAT
ATCGATTCCTTTAAATATGGTTGTTCACAACATGCTGGTGGTGGTGTTGGTTTAGAACGT
GTAGTTATGCTTTATTTAGGTTTAGGTAATATTAGAAAAGC
Length of 3' end seq. 691
Connected seq. ID CFG348P
Connected seq. 
>CFG348P.Seq
ATTTCACTTTTACTTAAATAATTTCCAAAATGTCAGAAACTACACCAGTTCCTGTTGGCG
AAGCAGGTGAAAAAAGTGCTACAGCATTAAAAAAAGAACAAAAGAAATTAGAAAAAGAGA
AAAAGATAGCAGAAGCTAAAGCAAAGAAAGCCGCTGAGAAATCAGCAGCAAGTGGTAATA
GTGGTGAACAAAAGAATGAAAAGAAACAAGAACAAGTTGAAGAGAATAATAGTAATTGGG
GTGAATTACCAATGAATCAAAGTAAAGAAAAGATTACAAGAGAATGGACAGATGTATCAC
AATTGACAGAATCATTAGTTGGTAAATCAGTATTAATTCGTGCACGTCTTTCAACAAGTC
GTTTACAAGGTGCCAATCTTTGTTTTGTACAATTAAGAGATGGTTTATATACAGTTCAAG
CAGTTGTTGCCAAAGGTGGATCCAACTCGAAATCAATGGTGCAATTTGTTGGACAAGTTC
CAAAGGAATCCATTGTTGACGTTCAAGCAACCCGTTGTCTCAACCAGTGTACCAATTGAA
AGTTGTACACAAAAATCCGTAGAATTACAAGTTTCATCATTTTTCATCGTATCAAAATCA
ACATTACTCCCATTACAAATTGAAGA----------ATTTCAATAAGGTCTTTGAAATTG
GTCCAGTTTTCCGTGCTGAAAACTCCAATACTCATCGTCATTTGACCGAGTTTGTTGGTC
TCGATCTTGAAATGACCTTTAAGGATCATTATCATGAGGCTTTGGATACTTTGGATCGTT
TAATGACCTCGATTTTCCGTGGTTTAGAGACTCGTTTCGCAAAGGAAATCGAATCTGTAA
ACACTCAATACCCATTCGAACCTTTCAAATTCACTTATCCATCACCACGTTTCACCTTTG
ATGAAGCCGCTGCTATGTTGGCCGAATTAAATGACCCAGATTACATTGTAAAAGACAATG
ATTTCAATACTCGTCAAGAGAAACGTTTAGGTAAAATCATCAAAGAGAAATTTGGTGTAG
ATTTCTTTATCGTCGATAAATTCCACGTTGAAGTTCGTCCATTCTATACCATGCCTGATC
CAAATAATCCACAATGGGCAAATGCTTACGATCTCTTTATGAGAGGTGAAGAAATTTGTT
CTGGTGCTCAACGTATTCATGATCCAGAATTACTCGAAAAGAGTGCTAAATCTCATGGTG
TTGTTATTGAGGATATTCAAGGTTATATCGATTCCTTTAAATATGGTTGTTCACAACATG
CTGGTGGTGGTGTTGGTTTAGAACGTGTAGTTATGCTTTATTTAGGTTTAGGTAATATTA
GAAAAGC
Length of connected seq. 1317
Full length Seq ID -
Full length Seq. -
Length of full length seq. -