CFG334
Library CF
(Link to library)
Clone ID CFG334
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14931-1
Original site URL
Representative seq. ID CFG334Z
(Link to Original site)
Representative DNA sequence
>CFG334 (CFG334Q) /CSM/CF/CFG3-B/CFG334Q.Seq.d/
XXXXXXXXXXATCATTGGTGGTGGTATGGCCTTCACTCTCAAGAAATTCATTGATAACAA
AGAGATTGGTTCATCATTGTTTGAGAAAACAGCCGAACAAATCACCAAAGATATCATTGC
CAAAGCCGCTAAAAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATAA
ATTTGATAATGATGCCAACATCAAAACCGTCACTCAAGATCAAGGTATCCCAGAAGGTTG
GATGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAGC
AAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCGG
TACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCAT
TGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTCAGTCA
TGTCTCAACTGGTGGTGGTGC
sequence update 2001. 6. 1
Translated Amino Acid sequence
---IGGGMAFTLKKFIDNKEIGSSLFEKTAEQITKDIIAKAAKNNVKLHFPVDYVIADKF
DNDANIKTVTQDQGIPEGWMGLDCGPETIKENRDTISRAKTIVWNGPMGVFEKSNFEAGT
KAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSTGGG


Translated Amino Acid sequence (All Frames)
Frame A:
---slvvvwpslsrnslitkrlvhhclrkqpnkspkislpkplkim*nyisqsimslpin
limmptskpslkikvsqkvgwv*ivvqrlskkteipsqeqkpsfgmvlwvylkraiskpv
qklpwmmlsmpqpmvlslslvvvipplvlpnttlkiksvmsqlvvv


Frame B:
---hwwwyglhsqeih**qrdwfiiv*ensrtnhqryhcqsr*k*ckitfpsrlchcr*i
***cqhqnrhsrsryprrldgfrlwsrdyqrkqryhlksknhrlewsygci*keqfrsry
kschg*ccqchnqwcyhyhwww*yrhlccqiqh*r*sqsclnwwwc


Frame C:
---IGGGMAFTLKKFIDNKEIGSSLFEKTAEQITKDIIAKAAKNNVKLHFPVDYVIADKF
DNDANIKTVTQDQGIPEGWMGLDCGPETIKENRDTISRAKTIVWNGPMGVFEKSNFEAGT
KAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSTGGG


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFG334 (CFG334Q) /CSM/CF/CFG3-B/CFG334Q.Seq.d/ 973 0.0
AFL371 (AFL371Q) /CSM/AF/AFL3-C/AFL371Q.Seq.d/ 959 0.0
VSD369 (VSD369Q) /CSM/VS/VSD3-C/VSD369Q.Seq.d/ 957 0.0
VHD789 (VHD789Q) /CSM/VH/VHD7-D/VHD789Q.Seq.d/ 957 0.0
VFO594 (VFO594Q) /CSM/VF/VFO5-D/VFO594Q.Seq.d/ 957 0.0
VFN471 (VFN471Q) /CSM/VF/VFN4-C/VFN471Q.Seq.d/ 957 0.0
VFL772 (VFL772Q) /CSM/VF/VFL7-C/VFL772Q.Seq.d/ 957 0.0
VFL140 (VFL140Q) /CSM/VF/VFL1-B/VFL140Q.Seq.d/ 957 0.0
VFK529 (VFK529Q) /CSM/VF/VFK5-B/VFK529Q.Seq.d/ 957 0.0
VFK253 (VFK253Q) /CSM/VF/VFK2-C/VFK253Q.Seq.d/ 957 0.0

own update 2004. 8.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF018637|AF018637.1 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, partial cds. 957 0.0 1
AF316577|AF316577.2 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, complete cds. 957 0.0 1
BU776741| (L36833) phosphoglycerate kinase [Schistosoma mansoni], mRNA sequence. 68 1e-16 3
BU766685| (L36833) phosphoglycerate kinase [Schistosoma mansoni], mRNA sequence. 68 2e-16 3
BU771972|PGK_SCHMA PHOSPHOGLYCERATE KINASE, mRNA sequence. 68 2e-16 3
BU724812|PGK_SCHMA PHOSPHOGLYCERATE KINASE, mRNA sequence. 68 2e-16 3
BU722559|PGK_SCHMA PHOSPHOGLYCERATE KINASE, mRNA sequence. 68 2e-16 3
BU725857|PGK_SCHMA PHOSPHOGLYCERATE KINASE, mRNA sequence. 68 2e-16 3
BU773106| (L36833) phosphoglycerate kinase [Schistosoma mansoni], mRNA sequence. 68 4e-16 3
AY309061|AY309061.1 Schistosoma japonicum phosphoglycerate kinase mRNA, complete cds. 68 1e-15 3
dna update 2004. 1.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9GPM4) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 283 2e-75
AF018637_1(AF018637|pid:none) Dictyostelium discoideum phosphogl... 283 2e-75
BC110004_1(BC110004|pid:none) Bos taurus phosphoglycerate kinase... 181 8e-45
AY500132_1(AY500132|pid:none) Sus scrofa testis-specific phospho... 180 2e-44
(Q7SIB7) RecName: Full=Phosphoglycerate kinase 1; EC=2.... 179 2e-44
AY309061_1(AY309061|pid:none) Schistosoma japonicum phosphoglyce... 177 9e-44
FN315990_1(FN315990|pid:none) Schistosoma japonicum isolate Anhu... 177 9e-44
EZ000104_1(EZ000104|pid:none) TSA: Schistosoma japonicum SJCHGC0... 177 9e-44
AY223444_1(AY223444|pid:none) Schistosoma japonicum clone ZZZ452... 177 9e-44
FN322120_1(FN322120|pid:none) Schistosoma japonicum isolate Anhu... 177 9e-44
protein update 2009. 5.14
PSORT

psg: 0.55 gvh: 0.33 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.10 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CFG334 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFG334Z
3' end seq.
>CFG334Z.Seq
----------ATCATTGGTGGTGGTATGGCCTTCACTCTCAAGAAATTCATTGATAACAA
AGAGATTGGTTCATCATTGTTTGAGAAAACAGCCGAACAAATCACCAAAGATATCATTGC
CAAAGCCGCTAAAAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATAA
ATTTGATAATGATGCCAACATCAAAACCGTCACTCAAGATCAAGGTATCCCAGAAGGTTG
GATGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAGC
AAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCGG
TACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCAT
TGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTCAGTCA
TGTCTCAACTGGTGGTGGTGC
Length of 3' end seq. 491
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -