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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG293
Library CF
(Link to library)
Clone ID CFG293
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12884-1
Original site URL
Representative seq. ID CFG293P
(Link to Original site)
Representative DNA sequence 
>CFG293 (CFG293Q) /CSM/CF/CFG2-D/CFG293Q.Seq.d/
ATCCACACAACCCCTGTCTCATCCCCACCACTACACAACAACAACTTTTTAATACAATAA
TAAACAGATATATTAAATTATGGCAGATACTTTTCAATATAAATCAAAAGATGGAAAATT
GATCGATTTTGATGTTTCAAGACCCTCATGTGAAAGGTATGGTTTTTTTGCAGGATCAAG
AGTAATGACACCAAAAGGTGCTGGAACAGTGATTGGAGTTTATGAAAATAATTTATGGTT
CCATATAGAAGGTGACGAAGGTGCATCATATTGGGATAATGGCAAAGATTACGAGTCATT
GGTATTTAAATTAAGTGTTCAACTTATCGATGACGAACCAATTGGACCAACTGAAAATAG
ATATAGAGTAAAGAGAATCACTTACCTTAAGAAAGAAGTTTCAATTATCCTTCAAAATGA
GAATGGACCATGTCCATTGATTTCAATTGCAAATGTTTTATTACTCTCTCAAAAAATTTA
TTTAGATCCTGATATTCAATTTGTTACAATTAAAAAACTTGGTGATTTAATTATGAAACA
TGCTAAAAGCCTTTATAAAGAAAATCAAGATGTATTAGAXXXXXXXXXXGAAACATGCTA
AAAGCCTTTATAAAGAAAATCAAGATGTATTAGAAATATTAGAAGATTATAATAAAAATG
TTTTACCAAGTTTAGAGAAGGGTTTAATTGTAAATATATACTTTGACAGTATTCAAGGAT
TTGAAAAGACTGAACCATGCCAAATTTTTGATTATTTAAATATTAAATTGGTTCATGGTT
GGATTGTAGATCCAAATCAAAAAGAGGTCAAGCAACTTATTGGCCACTTAAATTATAACG
ATTTAGTTCCAAAGATTGTTACTTTCGATCAAAGTTTTCCAAATGCAAAACCAGAGTTAC
AACAAAAAATTAATGATTTCGCAAATAGTAATCAATTAACAGATTATGGTTTGTCATTAA
TCCAAGAACACTTAAAAGAAGATGAACTATGTGTATTTTTTAGAAACAATCACTTTGCTA
CCATGACCAAACATGATGGATATTTACATATTTTAGTATCAGATGTAGGTTATGAAAGAG
AAAACAATATCATTTGGGATAGAATTATGTCAAAAGAAGGTGAATCCATTTTCCTCTCTG
GAGATTTCCGTTCAAGAAAAGATGAATTAATCATTGAAGTTGTAAATACTTTGAAACTAT
TTGGTTTCAAAGATAATGAAGTCGACGAAGCTAAATCTTATATTCAAACAATTGATAAAA
TGGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
stqplshphhyttttf*ynnkqiy*IMADTFQYKSKDGKLIDFDVSRPSCERYGFFAGSR
VMTPKGAGTVIGVYENNLWFHIEGDEGASYWDNGKDYESLVFKLSVQLIDDEPIGPTENR
YRVKRITYLKKEVSIILQNENGPCPLISIANVLLLSQKIYLDPDIQFVTIKKLGDLIMKH
AKSLYKENQDVL---

---KHAKSLYKENQDVLEILEDYNKNVLPSLEKGLIVNIYFDSIQGFEKTEPCQIFDYLN
IKLVHGWIVDPNQKEVKQLIGHLNYNDLVPKIVTFDQSFPNAKPELQQKINDFANSNQLT
DYGLSLIQEHLKEDELCVFFRNNHFATMTKHDGYLHILVSDVGYERENNIIWDRIMSKEG
ESIFLSGDFRSRKDELIIEVVNTLKLFGFKDNEVDEAKSYIQTIDKMD
Translated Amino Acid sequence (All Frames) 
Frame A:
ihttpvsspplhnnnfliq**tdilnygryfsi*ikrwkidrf*cfktlm*kvwffcrik
sndtkrcwnsdwsl*k*fmvpyrr*rrciilg*wqrlrvigi*ikcstyr*rtnwtn*k*
i*skenhlp*ersfnypsk*ewtmsidfnckcfitlsknlfrs*ysicyn*ktw*fnyet
c*kpl*rksrcir---

---etc*kpl*rksrcirnirrl**kcftkfregfnckyil*qysri*kd*tmpnf*lfk
y*igswldcrskskrgqatywplkl*rfsskdcyfrskfskcktrvttkn**frk**sin
rlwfvinprtlkrr*tmcif*kqslcyhdqt*wiftyfsircrl*krkqyhlg*nyvkrr
*ihfplwrfpfkkr*inh*sckyfetiwfqr**srrs*ilysnn**ng

Frame B:
stqplshphhyttttf*ynnkqiy*IMADTFQYKSKDGKLIDFDVSRPSCERYGFFAGSR
VMTPKGAGTVIGVYENNLWFHIEGDEGASYWDNGKDYESLVFKLSVQLIDDEPIGPTENR
YRVKRITYLKKEVSIILQNENGPCPLISIANVLLLSQKIYLDPDIQFVTIKKLGDLIMKH
AKSLYKENQDVL---

---KHAKSLYKENQDVLEILEDYNKNVLPSLEKGLIVNIYFDSIQGFEKTEPCQIFDYLN
IKLVHGWIVDPNQKEVKQLIGHLNYNDLVPKIVTFDQSFPNAKPELQQKINDFANSNQLT
DYGLSLIQEHLKEDELCVFFRNNHFATMTKHDGYLHILVSDVGYERENNIIWDRIMSKEG
ESIFLSGDFRSRKDELIIEVVNTLKLFGFKDNEVDEAKSYIQTIDKMD

Frame C:
phnpcliptttqqqlfntiinryiklwqilfninqkmen*silmfqdphvkgmvflqdqe
**hqkvleq*lefmkiiygsi*kvtkvhhigimakitshwyln*vfnlsmtnqldqlkid
ie*resltlrkkfqlsfkmrmdhvh*fqlqmfyyslkkfi*ilifnllqlknlvi*l*nm
lkafikkikmy*---

---nmlkafikkikmy*ky*kiiikmfyqv*rrv*l*iytltvfkdlkrlnhakflii*i
lnwfmvgl*iqikkrssnllat*iiti*fqrlllsikvfqmqnqsynkklmisqivin*q
imvch*sknt*kkmnyvyfletitllp*pnmmdiyif*yqm*vmkektisfgielcqkkv
npfssleisvqekmn*slkl*il*nylvskimkstklnlifkqlikw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG293 (CFG293Q) /CSM/CF/CFG2-D/CFG293Q.Seq.d/                       2407   0.0
CFI619 (CFI619Q) /CSM/CF/CFI6-A/CFI619Q.Seq.d/                       1340   0.0
CFG420 (CFG420Q) /CSM/CF/CFG4-A/CFG420Q.Seq.d/                       1340   0.0
AFE392 (AFE392Q) /CSM/AF/AFE3-D/AFE392Q.Seq.d/                       1340   0.0
SFC857 (SFC857Q) /CSM/SF/SFC8-C/SFC857Q.Seq.d/                       1300   0.0
CHD877 (CHD877Q) /CSM/CH/CHD8-D/CHD877Q.Seq.d/                       1273   0.0
CFH281 (CFH281Q) /CSM/CF/CFH2-D/CFH281Q.Seq.d/                       1263   0.0
SFC239 (SFC239Q) /CSM/SF/SFC2-B/SFC239Q.Seq.d/                       1257   0.0
SFI521 (SFI521Q) /CSM/SF/SFI5-A/SFI521Q.Seq.d/                       1253   0.0
CHB845 (CHB845Q) /CSM/CH/CHB8-B/CHB845Q.Seq.d/                       1245   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   3e-11  21
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    32   3e-09  19
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12 section 4 of 9 of the complete sequence.    34   5e-08  20
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    32   1e-07  20
AL929351|AL929351.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4.    36   2e-07  20
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    36   2e-07  18
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           34   7e-07  28
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    36   7e-07  21
AE014842|AE014842.1 Plasmodium falciparum 3D7 chromosome 11 section 7 of 8 of the complete sequence.    36   1e-06  16
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    36   2e-06  18
dna update 2004. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC161433_1(BC161433|pid:none) Xenopus tropicalis hypothetical pr...   147   1e-42
BC055816_1(BC055816|pid:none) Mus musculus RIKEN cDNA B230380D07...   134   6e-41
AK046403_1(AK046403|pid:none) Mus musculus adult male corpora qu...   134   6e-41
BC069845_1(BC069845|pid:none) Mus musculus RIKEN cDNA B230380D07...   134   2e-40
AB168900_1(AB168900|pid:none) Macaca fascicularis testis cDNA, c...   140   1e-31
(Q2KJ22) RecName: Full=Protein FAM63A;  &BC105561_1(BC105561|pid...   139   2e-31
BC093521_1(BC093521|pid:none) Mus musculus family with sequence ...   139   3e-31
(Q76LS9) RecName: Full=Protein FAM63A; AltName: Full=NF-E2 induc...   139   3e-31
AK036838_1(AK036838|pid:none) Mus musculus adult female vagina c...   139   3e-31
BC039762_1(BC039762|pid:none) Mus musculus family with sequence ...   139   3e-31
protein update 2009. 5.14
PSORT 

 psg: 0.49  gvh: 0.29  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFG293 is cyt
5' end seq. ID CFG293F
5' end seq. 
>CFG293F.Seq
ATCCACACAACCCCTGTCTCATCCCCACCACTACACAACAACAACTTTTTAATACAATAA
TAAACAGATATATTAAATTATGGCAGATACTTTTCAATATAAATCAAAAGATGGAAAATT
GATCGATTTTGATGTTTCAAGACCCTCATGTGAAAGGTATGGTTTTTTTGCAGGATCAAG
AGTAATGACACCAAAAGGTGCTGGAACAGTGATTGGAGTTTATGAAAATAATTTATGGTT
CCATATAGAAGGTGACGAAGGTGCATCATATTGGGATAATGGCAAAGATTACGAGTCATT
GGTATTTAAATTAAGTGTTCAACTTATCGATGACGAACCAATTGGACCAACTGAAAATAG
ATATAGAGTAAAGAGAATCACTTACCTTAAGAAAGAAGTTTCAATTATCCTTCAAAATGA
GAATGGACCATGTCCATTGATTTCAATTGCAAATGTTTTATTACTCTCTCAAAAAATTTA
TTTAGATCCTGATATTCAATTTGTTACAATTAAAAAACTTGGTGATTTAATTATGAAACA
TGCTAAAAGCCTTTATAAAGAAAATCAAGATGTATTAGA----------
Length of 5' end seq. 579
3' end seq. ID CFG293Z
3' end seq. 
>CFG293Z.Seq
----------GAAACATGCTAAAAGCCTTTATAAAGAAAATCAAGATGTATTAGAAATAT
TAGAAGATTATAATAAAAATGTTTTACCAAGTTTAGAGAAGGGTTTAATTGTAAATATAT
ACTTTGACAGTATTCAAGGATTTGAAAAGACTGAACCATGCCAAATTTTTGATTATTTAA
ATATTAAATTGGTTCATGGTTGGATTGTAGATCCAAATCAAAAAGAGGTCAAGCAACTTA
TTGGCCACTTAAATTATAACGATTTAGTTCCAAAGATTGTTACTTTCGATCAAAGTTTTC
CAAATGCAAAACCAGAGTTACAACAAAAAATTAATGATTTCGCAAATAGTAATCAATTAA
CAGATTATGGTTTGTCATTAATCCAAGAACACTTAAAAGAAGATGAACTATGTGTATTTT
TTAGAAACAATCACTTTGCTACCATGACCAAACATGATGGATATTTACATATTTTAGTAT
CAGATGTAGGTTATGAAAGAGAAAACAATATCATTTGGGATAGAATTATGTCAAAAGAAG
GTGAATCCATTTTCCTCTCTGGAGATTTCCGTTCAAGAAAAGATGAATTAATCATTGAAG
TTGTAAATACTTTGAAACTATTTGGTTTCAAAGATAATGAAGTCGACGAAGCTAAATCTT
ATATTCAAACAATTGATAAAATGGAT
Length of 3' end seq. 676
Connected seq. ID CFG293P
Connected seq. 
>CFG293P.Seq
ATCCACACAACCCCTGTCTCATCCCCACCACTACACAACAACAACTTTTTAATACAATAA
TAAACAGATATATTAAATTATGGCAGATACTTTTCAATATAAATCAAAAGATGGAAAATT
GATCGATTTTGATGTTTCAAGACCCTCATGTGAAAGGTATGGTTTTTTTGCAGGATCAAG
AGTAATGACACCAAAAGGTGCTGGAACAGTGATTGGAGTTTATGAAAATAATTTATGGTT
CCATATAGAAGGTGACGAAGGTGCATCATATTGGGATAATGGCAAAGATTACGAGTCATT
GGTATTTAAATTAAGTGTTCAACTTATCGATGACGAACCAATTGGACCAACTGAAAATAG
ATATAGAGTAAAGAGAATCACTTACCTTAAGAAAGAAGTTTCAATTATCCTTCAAAATGA
GAATGGACCATGTCCATTGATTTCAATTGCAAATGTTTTATTACTCTCTCAAAAAATTTA
TTTAGATCCTGATATTCAATTTGTTACAATTAAAAAACTTGGTGATTTAATTATGAAACA
TGCTAAAAGCCTTTATAAAGAAAATCAAGATGTATTAGA----------GAAACATGCTA
AAAGCCTTTATAAAGAAAATCAAGATGTATTAGAAATATTAGAAGATTATAATAAAAATG
TTTTACCAAGTTTAGAGAAGGGTTTAATTGTAAATATATACTTTGACAGTATTCAAGGAT
TTGAAAAGACTGAACCATGCCAAATTTTTGATTATTTAAATATTAAATTGGTTCATGGTT
GGATTGTAGATCCAAATCAAAAAGAGGTCAAGCAACTTATTGGCCACTTAAATTATAACG
ATTTAGTTCCAAAGATTGTTACTTTCGATCAAAGTTTTCCAAATGCAAAACCAGAGTTAC
AACAAAAAATTAATGATTTCGCAAATAGTAATCAATTAACAGATTATGGTTTGTCATTAA
TCCAAGAACACTTAAAAGAAGATGAACTATGTGTATTTTTTAGAAACAATCACTTTGCTA
CCATGACCAAACATGATGGATATTTACATATTTTAGTATCAGATGTAGGTTATGAAAGAG
AAAACAATATCATTTGGGATAGAATTATGTCAAAAGAAGGTGAATCCATTTTCCTCTCTG
GAGATTTCCGTTCAAGAAAAGATGAATTAATCATTGAAGTTGTAAATACTTTGAAACTAT
TTGGTTTCAAAGATAATGAAGTCGACGAAGCTAAATCTTATATTCAAACAATTGATAAAA
TGGAT
Length of connected seq. 1255
Full length Seq ID -
Full length Seq. -
Length of full length seq. -