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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG280
Library CF
(Link to library)
Clone ID CFG280
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFG280P
(Link to Original site)
Representative DNA sequence 
>CFG280 (CFG280Q) /CSM/CF/CFG2-D/CFG280Q.Seq.d/
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTGTTAC
AACACTATGGGTCAAACCTCTGAAAATGTCGCAGAXXXXXXXXXXTTTTGGTGTCACCAG
AAAAGACCAAGATGAATTCTCTGTAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCA
GGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATC
GTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTA
AAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGAT
GGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTT
GAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGT
CCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGAC
GTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGT
TTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGT
GCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAA
TATGG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKET
APDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYT
VNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISGCY
NTMGQTSENVA---

---FGVTRKDQDEFSVIHTRRQVPPKKQVNLTMKSFQSP*rprmakpsssiktkvsvrkp
plqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvs
nhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqmalv
sl*vih*vllvpvkwlpfqenyivvkvnm
Translated Amino Acid sequence (All Frames) 
Frame A:
ITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKRGAFKET
APDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPKEVPCYT
VNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDPIISGCY
NTMGQTSENVA---

---fwchqkrpr*ilcnshkkagaaqkagkfddeivpvtvktedgktivvdkdegirekt
tvadlaklkpafkeggtttagnssqmsdgaaaclvmkrstaerlglkvelvfvafaavgv
epsimgigpavaipaalkqaglttkdidvfeineafasqafysckvlgldmnkvnpngsg
ialghplgatgarqmatisrelhrrkgky

Frame B:
*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklkeehskrq
hqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqrkyhviq
stdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriqslvvvt
tlwvkplkmsq---

---FGVTRKDQDEFSVIHTRRQVPPKKQVNLTMKSFQSP*rprmakpsssiktkvsvrkp
plqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdwvsrlnwfs*llllsvs
nhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvvrfwvwi*tkliqmalv
sl*vih*vllvpvkwlpfqenyivvkvnm

Frame C:
n**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*krsiqrds
tr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftkgstmlys
qqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgsnh*wllq
hygsnl*kcrr---

---lvspektkmnsl*ftqegrcrpksr*i*r*nrsshrkdrgwqnhrrr*rrryp*enh
rcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrkigsqg*igfrsfcccrcr
tihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql*gfgfgyeqs*skwlwy
rfrssircywcpsngyhfkritss*r*iw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG280 (CFG280Q) /CSM/CF/CFG2-D/CFG280Q.Seq.d/                       2329   0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/                       2305   0.0
SFK756 (SFK756Q) /CSM/SF/SFK7-C/SFK756Q.Seq.d/                       2292   0.0
VFE239 (VFE239Q) /CSM/VF/VFE2-B/VFE239Q.Seq.d/                       2286   0.0
SFH501 (SFH501Q) /CSM/SF/SFH5-A/SFH501Q.Seq.d/                       1285   0.0
SFG758 (SFG758Q) /CSM/SF/SFG7-C/SFG758Q.Seq.d/                       1273   0.0
VFJ317 (VFJ317Q) /CSM/VF/VFJ3-A/VFJ317Q.Seq.d/                       1261   0.0
VHE451 (VHE451Q) /CSM/VH/VHE4-C/VHE451Q.Seq.d/                       1215   0.0
VFM101 (VFM101Q) /CSM/VF/VFM1-A/VFM101Q.Seq.d/                       1215   0.0
VFL606 (VFL606Q) /CSM/VF/VFL6-A/VFL606Q.Seq.d/                       1215   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1152   0.0    3
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   3e-18  7
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    40   2e-14  6
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   1e-12  5
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   5e-11  4
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   2e-09  3
CB893643|CB893643.1 EST646435 HOGA Medicago truncatula cDNA clone HOGA-28F15, mRNA sequence.    40   5e-09  5
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
CA515447|CA515447.1 KS09042A06 KS09 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
BM066045|BM066045.1 KS07010C02 KS07 Capsicum annuum cDNA, mRNA sequence.    68   3e-08  2
dna update 2004. 3. 7
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   712   0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   384   e-105
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   383   e-105
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   382   e-104
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   379   e-103
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   379   e-103
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   377   e-103
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   377   e-103
BT034496_1(BT034496|pid:none) Zea mays full-length cDNA clone ZM...   377   e-103
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       374   e-102
protein update 2009. 5.14
PSORT 

 psg: 0.62  gvh: 0.40  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.38  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CFG280 is nuc
5' end seq. ID CFG280F
5' end seq. 
>CFG280F.Seq
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTGTTAC
AACACTATGGGTCAAACCTCTGAAAATGTCGCAGA----------
Length of 5' end seq. 575
3' end seq. ID CFG280Z
3' end seq. 
>CFG280Z.Seq
----------TTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAATTCACACAA
GAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGT
AAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAAC
CACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGC
TGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTAC
CGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGT
CGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGC
TGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGC
ATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGG
TATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAG
AGAATTACATCGTCGTAAAGGTAAATATGG
Length of 3' end seq. 620
Connected seq. ID CFG280P
Connected seq. 
>CFG280P.Seq
ATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTATTTCTCGTCACTTAAGCACT
GGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAAATCAGGAGATGATATTGTA
ATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAGAGGAGCATTCAAAGAGACA
GCACCAGATGATTTATTAGCACCAGTTATTAAACATATTATCAAAGTTACCAAATTAGAT
CCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACCAAGATCATCACAAGGTGCA
ACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAAGGAAGTACCATGTTATACA
GTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAATTGTGCAGCAGCAGTCAAA
GCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATCAATGAGTTTAAATCCAATG
GCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCCAATCATTAGTGGTTGTTAC
AACACTATGGGTCAAACCTCTGAAAATGTCGCAGA----------TTTTGGTGTCACCAG
AAAAGACCAAGATGAATTCTCTGTAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCA
GGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATC
GTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTA
AAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGAT
GGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTT
GAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGT
CCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGAC
GTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGT
TTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGT
GCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAA
TATGG
Length of connected seq. 1195
Full length Seq ID -
Full length Seq. -
Length of full length seq. -