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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFG264
Library CF
(Link to library)
Clone ID CFG264
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14176-1
Original site URL
Representative seq. ID CFG264E
(Link to Original site)
Representative DNA sequence 
>CFG264 (CFG264Q) /CSM/CF/CFG2-C/CFG264Q.Seq.d/
AAAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACA
ACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAAT
GAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGT
TTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAAC
TGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTT
ATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGA
ATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGG
TGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAG
AGAACATAGTGTGCCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGC
AGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACA
TATGNTTTCATTAAAACTTAAGGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAAT
TGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAG
AGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATAT
GATCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACC
AATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAANCNAGAAGNNCAACAAATTC
sequence update 2001. 6. 9
Translated Amino Acid sequence 
knnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTV
SDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPE
LEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKXSVVASIIA
AGYSVGQDAAIKARQVDEEHMXSLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVER
ANALDERFQISGFFKSASDMISXQASNLMKAAEENSTVSPIVNKVSSFGTFIXXEXQQI
Translated Amino Acid sequence (All Frames) 
Frame A:
kkqhtltqyiyyfklylnptttititttthsliyi*i*nnesrfhslcfkyfiesky*ns
frfflilwknc*fifkk*pnw*fttsnssi*irfscknsfiinkcincr*snsscsiytr
irv*fnttifsttti**sqw*tttttttic*sttrrhck*rt*car**kk*xlcccinyc
srl*cwtrrch*stss**rtyxfikt*gws*scqsksk*n***pshf*ecrch*gcscre
skctr*kipnlrfl*eck*ydlsxsfqfnessrrk*ysftnrk*sfkfwyfy*xrxxtn


Frame B:
knnthlhniftilnyi*irqqq*q*qqqpil*YTYKYKIMNPDFTVYVSNISLKANTKTV
SDFFSFCGRIVNLFLRNDPTGSSQQAIVVFESDSAAKTALLLTNALIVDKVIQVVQFTPE
LEFDLTQQFSQQQQFNNLSGEQQPQQQQYVSQPQEDIVNREHSVPDNERSKXSVVASIIA
AGYSVGQDAAIKARQVDEEHMXSLKLKVGAEAVKAKANEIDNNLHISESAAAIKGAVVER
ANALDERFQISGFFKSASDMISXQASNLMKAAEENSTVSPIVNKVSSFGTFIXXEXQQI


Frame C:
ktthtytiyllf*iisksdnnnnnnnnnpffnihinik**iqisqfmfqifh*kqilkqf
qifshfveelliyf*emtqlvvhnkq**ylnqiqlqkqlyy*qmh*l*ik*fklfnlhqn
*sli*hnnflnnnnliisvvnnnhnnnnmlvnhkktl*ienivcqimkevxplllhqllq
qvivldktlplkhvklmknixfh*nlrlelklskqkqmkliitftflrvplplrvql*re
qmhsmkdsksqvslrvqvi*slxklpi**kqpkkivqfhqs*ikfqvlvlllxxkxnkf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG264 (CFG264Q) /CSM/CF/CFG2-C/CFG264Q.Seq.d/                        852   0.0
VSB202 (VSB202Q) /CSM/VS/VSB2-A/VSB202Q.Seq.d/                        844   0.0
VFO778 (VFO778Q) /CSM/VF/VFO7-D/VFO778Q.Seq.d/                        844   0.0
VFM217 (VFM217Q) /CSM/VF/VFM2-A/VFM217Q.Seq.d/                        844   0.0
VFJ841 (VFJ841Q) /CSM/VF/VFJ8-B/VFJ841Q.Seq.d/                        844   0.0
VFJ755 (VFJ755Q) /CSM/VF/VFJ7-C/VFJ755Q.Seq.d/                        844   0.0
VFG496 (VFG496Q) /CSM/VF/VFG4-D/VFG496Q.Seq.d/                        844   0.0
VFG273 (VFG273Q) /CSM/VF/VFG2-D/VFG273Q.Seq.d/                        844   0.0
VFC715 (VFC715Q) /CSM/VF/VFC7-A/VFC715Q.Seq.d/                        844   0.0
VFB756 (VFB756Q) /CSM/VF/VFB7-C/VFB756Q.Seq.d/                        844   0.0
own update 2001.12. 2
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE014829|AE014829.1 Plasmodium falciparum 3D7 chromosome 10 section 1 of 7 of the complete sequence.    46   3e-08  11
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-05  16
AE014836|AE014836.1 Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence.    32   7e-05  16
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    40   1e-04  13
AE014845|AE014845.1 Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete sequence.    34   1e-04  15
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    34   6e-04  14
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   6e-04  14
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   6e-04  12
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    38   7e-04  14
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    34   0.001  13
dna update 2003.12.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT068289_1(BT068289|pid:none) Zea mays full-length cDNA clone ZM...    63   2e-08
AC090882_24(AC090882|pid:none) Oryza sativa chromosome 3 BAC OSJ...    63   2e-08
AC091811_13(AC091811|pid:none) Oryza sativa chromosome 3 BAC OSJ...    63   2e-08
BT061154_1(BT061154|pid:none) Zea mays full-length cDNA clone ZM...    63   2e-08
CR855144_15(CR855144|pid:none) Oryza sativa (indica cultivar-gro...    62   2e-08
EU958085_1(EU958085|pid:none) Zea mays clone 1672545 RNA-binding...    62   3e-08
AY087960_1(AY087960|pid:none) Arabidopsis thaliana clone 39922 m...    61   4e-08
BT062058_1(BT062058|pid:none) Zea mays full-length cDNA clone ZM...    61   6e-08
AK061483_1(AK061483|pid:none) Oryza sativa Japonica Group cDNA c...    61   6e-08
AP008212_69(AP008212|pid:none) Oryza sativa (japonica cultivar-g...    61   6e-08
protein update 2009. 6.30
PSORT 

 psg: 0.84  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for CFG264 is cyt
5' end seq. ID CFG264F
5' end seq. 
>CFG264F.Seq
AAAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACA
ACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAAT
GAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGT
TTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAAC
TGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTT
ATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGA
ATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGG
TGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAG
AGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGC
AGCAGGTTATAGTGTTGGACA----------
Length of 5' end seq. 561
3' end seq. ID CFG264Z
3' end seq. 
>CFG264Z.Seq
----------TCAACCACAAGAAGNCNTTGTAAATAGAGAACATAGTGTGCCAGATAATG
AAAGAAGTANNCCCTCTGTTGTTGCATCAATTATTGCAGCAGGTNATAGTGTTGGACAAG
ACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATATGNTTTCATTAAAACTTAAGG
TTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTGATAATAACCTTCACATTTCTG
AGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAGCAAATGCACTCGATGAAAGAT
TCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGATCTCTCNNCAAGCTTCCAATT
TAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAATCGTAAATAAAGTTTCAAGTT
TTGGTACTTTTATTAANCNAGAAGNNCAACAAATTC
Length of 3' end seq. 446
Connected seq. ID CFG264P
Connected seq. 
>CFG264P.Seq
AAAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACA
ACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAAT
GAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGT
TTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAAC
TGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTT
ATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGA
ATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGG
TGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAG
AGAACATAGTGTGCCAGATAATGAAAGAAGTAAAACCTCTGTTGTTGCATCAATTATTGC
AGCAGGTTATAGTGTTGGACA----------TCAACCACAAGAAGNCNTTGTAAATAGAG
AACATAGTGTGCCAGATAATGAAAGAAGTANNCCCTCTGTTGTTGCATCAATTATTGCAG
CAGGTNATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACATA
TGNTTTCATTAAAACTTAAGGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAATTG
ATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAGAG
CAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATATGA
TCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACCAA
TCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAANCNAGAAGNNCAACAAATTC
Length of connected seq. 1007
Full length Seq ID CFG264E
Full length Seq. 
>CFG264E.Seq
AAAAAACAACACACACTTACACAATATATTTACTATTTTAAATTATATCTAAATCCGACA
ACAACAATAACAATAACAACAACAACCCATTCTTTAATATACATATAAATATAAAATAAT
GAATCCAGATTTCACAGTTTATGTTTCAAATATTTCATTGAAAGCAAATACTAAAACAGT
TTCAGATTTTTTCTCATTTTGTGGAAGAATTGTTAATTTATTTTTAAGAAATGACCCAAC
TGGTAGTTCACAACAAGCAATAGTAGTATTTGAATCAGATTCAGCTGCAAAAACAGCTTT
ATTATTAACAAATGCATTAATTGTAGATAAAGTAATTCAAGTTGTTCAATTTACACCAGA
ATTAGAGTTTGATTTAACACAACAATTTTCTCAACAACAACAATTTAATAATCTCAGTGG
TGAACAACAACCACAACAACAACAATATGTTAGTCAACCACAAGAAGACATTGTAAATAG
AGAACATAGTGTGCCAGATAATGAAAGAAGTAAANCCTCTGTTGTTGCATCAATTATTGC
AGCAGGTTATAGTGTTGGACAAGACGCTGCCATTAAAGCACGTCAAGTTGATGAAGAACA
TATGNTTTCATTAAAACTTAAGGTTGGAGCTGAAGCTGTCAAAGCAAAAGCAAATGAAAT
TGATAATAACCTTCACATTTCTGAGAGTGCCGCTGCCATTAAGGGTGCAGTTGTAGAGAG
AGCAAATGCACTCGATGAAAGATTCCAAATCTCAGGTTTCTTTAAGAGTGCAAGTGATAT
GATCTCTCNNCAAGCTTCCAATTTAATGAAAGCAGCCGAAGAAAATAGTACAGTTTCACC
AATCGTAAATAAAGTTTCAAGTTTTGGTACTTTTATTAANCNAGAAGNNCAACAAATTC
Length of full length seq. 899