CFG253
Library CF
(Link to library)
Clone ID CFG253
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID CFG253P
(Link to Original site)
Representative DNA sequence
>CFG253 (CFG253Q) /CSM/CF/CFG2-C/CFG253Q.Seq.d/
ATATTTTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAAT
TNGTTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAGGTXXXXXXXXXXCCA
CCACCNTCCCATNAGACACCTGCAGCTCCACCATCAGNCGNAGGTGCTCCACCCACCACC
ACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGC
TCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTC
CATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCA
AAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAA
TCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTC
AGATTATTAAATTATTCTTAACAAAATTCAAATTCAAAAAAATCATTAATAAAGATTTCT
T
sequence update 2001. 6. 1
Translated Amino Acid sequence
ifflthtflyi*ysf*fl*xvfffl**LNXVKKKG---

---HHXPXRHLQLHHQXXVLHPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRND
LLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDD
DEWSDY*iilnkiqiqknh**rfl


Translated Amino Acid sequence (All Frames)
Frame A:
ifff*htlfytynivfsfynxffffynn*ix*kkk---

---pppshxtpaappsxxgappttttstttf*wsttstttngqcssiirrwwcqrrwkk*
sfgfhs*wcks*gc**nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r
**mvrllnys*qnsnskkslikis

Frame B:
yfffnthffihii*flvfiixffffiiik*xkkkr---

---HHXPXRHLQLHHQXXVLHPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRND
LLASIRSGASLKAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDD
DEWSDY*iilnkiqiqknh**rfl

Frame C:
ifflthtflyi*ysf*fl*xvfffl**LNXVKKKG---

---ttxpxdtcsstixrrcsthhhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveemi
fwlpfvvvqvlrllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtm
mngqiiklfltkfkfkkiinkdf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/ 402 e-111
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/ 402 e-111
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/ 402 e-111
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/ 402 e-111
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/ 402 e-111
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/ 402 e-111
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/ 402 e-111
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/ 402 e-111
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/ 402 e-111
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/ 402 e-111

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. 402 e-158 7
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence. 50 0.033 1
BX470139|BX470139.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-141O12. 42 0.050 2
AX345104|AX345104.1 Sequence 175 from Patent WO0200928. 48 0.13 1
AC135319|AC135319.27 Medicago truncatula clone mth2-6g4, complete sequence. 42 0.30 5
BX005129|BX005129.6 Zebrafish DNA sequence from clone CH211-241D24 in linkage group 6. 46 0.52 1
BX823918|BX823918.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZB07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress). 46 0.52 1
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence. 46 0.52 1
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22. 46 0.52 1
AB045574|AB045574.1 Danio rerio DNA, fkk-7b locus, insertion site of the medaka fish Tol2 element. 46 0.52 1
dna update 2004. 3. 7
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A... 83 5e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso... 39 0.063

protein update 2008.12.27
PSORT

psg: 0.54 gvh: 0.38 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.12
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: mitochondrial
32.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for CFG253 is mit

5' end seq. ID CFG253F
5' end seq.
>CFG253F.Seq
ATATTTTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAAT
TNGTTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAGGT----------
Length of 5' end seq. 107
3' end seq. ID CFG253Z
3' end seq.
>CFG253Z.Seq
----------CCACCACCNTCCCATNAGACACCTGCAGCTCCACCATCAGNCGNAGGTGC
TCCACCCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCAC
CAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATG
ATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCAC
TCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTG
CAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACG
ATGATGAATGGTCAGATTATTAAATTATTCTTAACAAAATTCAAATTCAAAAAAATCATT
AATAAAGATTTCTT
Length of 3' end seq. 424
Connected seq. ID CFG253P
Connected seq.
>CFG253P.Seq
ATATTTTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAAT
TNGTTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAGGT----------CCA
CCACCNTCCCATNAGACACCTGCAGCTCCACCATCAGNCGNAGGTGCTCCACCCACCACC
ACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGC
TCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTC
CATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCA
AAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAA
TCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGACGATGATGAATGGTC
AGATTATTAAATTATTCTTAACAAAATTCAAATTCAAAAAAATCATTAATAAAGATTTCT
T
Length of connected seq. 531
Full length Seq ID -
Full length Seq. -
Length of full length seq. -