>CFG235 (CFG235Q) /CSM/CF/CFG2-B/CFG235Q.Seq.d/
ATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTG
CTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTA
ATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCT
ATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTAT
TTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAA
ACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATG
GTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAAT
TCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAA
AATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCT
TTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTGAA
CGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATTXXXXXXXXXXGCAGCC
GGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCGTACT
GCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCAAGGTTAC
AATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTAATGAA
GGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCT
CAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAAT
ACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATT
AGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTG
AAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAA
CAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGGAAC
AGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACGAATAACC
CAAACCGGNACTTGCACGTAAAGAGGNC

il**ffvvvsnflldtkrrllhfihlqviciplliifghvivsltktvdsvhlnaimpvs
mqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetmlimislcvicvsqhwmim
vtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTAYPDENGLGWDILASFYNMDINAPS
FNIEKEPGFVWNGQTNGHTERFVQSSLKADQSEI---

---AAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQRAGNGAR
NYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFANTARE
VGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserr
rlqrnrerqepirtyttaqeaqritqtgtct*rg

Frame A:
il**ffvvvsnflldtkrrllhfihlqviciplliifghvivsltktvdsvhlnaimpvs
mqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetmlimislcvicvsqhwmim
vtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTAYPDENGLGWDILASFYNMDINAPS
FNIEKEPGFVWNGQTNGHTERFVQSSLKADQSEI---

---AAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQRAGNGAR
NYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGFANTARE
VGDGIRITAEEGYELIKDGAEETWVKKY*rlslikikkaqqrmaeqeerrrlmqeeserr
rlqrnrerqepirtyttaqeaqritqtgtct*rg

Frame B:
ycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**ch*pkrwirst*mq*cryl
cnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc***fhcvlyafpsig*lw
lq*qsntr*tsspspiqnsiqlmg*psvlihsmilliqmkmvwdgislhlfiiwismlhl
lilkksqalygmvklmdilnvssnhh*klinlky---

---qpvlrvvpqellpelvviflvllvvlvtlyvaellvmlikvtip*emvhkelatahv
imlmkvtip*emvhkelatahvimlnkvikhgekvsmrlvmispilhmm*vmvspilhvk
*vmeleslqrrdmnslkmelkklg*rnikgyp*lklkkhnkewlnkkkeeg*ckkkvked
dckgtekdksqleliqlhkklne*pkpxlarkex

Frame C:
iviifcssiqfsfgyekaiasfypppgdlhptthnfwacnsvinqnggfgplecnnagiy
aifstaneiidgneymlplfyigrstidvrdriadhsrrnhvdndfivcymrfpalddyg
ysnkvtpveqallhqfktqfnswdnprf*stv*yclsr*kwfgmgypcifl*ygyqcsif
*y*krarlcmewsn*wty*tfrpiiiks*si*ni---

---src*gwcrrscfqswwlyfsyc*scw*lyt*qsyslc*srlqfhekwctkswqrrt*
lc**rlqfrerwctkswqrrt*lcstrlssmerrcq*dw**yrqyct*cr*wfrqyct*s
r*wn*nhcrggi*th*rws*rnlgeeilkviln*n*ksttkng*trrkkkvdarrk*kkt
iakeqrktran*nlynctrsstnnpnrxlhvkr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFG235 (CFG235Q) /CSM/CF/CFG2-B/CFG235Q.Seq.d/                       2171   0.0
SFB867 (SFB867Q) /CSM/SF/SFB8-C/SFB867Q.Seq.d/                       1263   0.0
CHP572 (CHP572Q) /CSM/CH/CHP5-C/CHP572Q.Seq.d/                       1261   0.0
CFA620 (CFA620Q) /CSM/CF/CFA6-A/CFA620Q.Seq.d/                       1261   0.0
CHC811 (CHC811Q) /CSM/CH/CHC8-A/CHC811Q.Seq.d/                       1259   0.0
SFE811 (SFE811Q) /CSM/SF/SFE8-A/SFE811Q.Seq.d/                       1257   0.0
SFH473 (SFH473Q) /CSM/SF/SFH4-D/SFH473Q.Seq.d/                       1255   0.0
CHD331 (CHD331Q) /CSM/CH/CHD3-B/CHD331Q.Seq.d/                       1255   0.0
CFD119 (CFD119Q) /CSM/CF/CFD1-A/CFD119Q.Seq.d/                       1255   0.0
AFO678 (AFO678Q) /CSM/AF/AFO6-D/AFO678Q.Seq.d/                       1255   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    76   1e-09  1
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    68   3e-07  1
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   0.42   11
AP003190|AP003190.2 Clostridium perfringens str. 13 DNA, complete genome, section 6/10.    36   0.62   2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   1.0    11
AL157950|AL157950.13 Human DNA sequence from clone RP5-940J24 on chromosome 1p13.1-13.3.    34   1.6    7
AC115373|AC115373.4 Rattus norvegicus chromosome 18 clone CH230-124C16, WORKING DRAFT SEQUENCE, 1 ordered piece.    34   1.7    8
AC023514|AC023514.2 Homo sapiens chromosome 3 clone RP11-137G22 map 3p, complete sequence.    32   4.0    10
AC103427|AC103427.6 Rattus norvegicus clone CH230-149N19, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces.    44   5.0    1
AC094690|AC094690.7 Rattus norvegicus clone CH230-5E18, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    44   5.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    51   1e-04
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    49   5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    49   5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    47   0.001
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.002
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    44   0.009
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR...    42   0.035
BT050559_1(BT050559|pid:none) Drosophila melanogaster AT13054 fu...    42   0.046

 psg: 0.73  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for CFG235 is nuc

>CFG235F.Seq
ATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTG
CTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTA
ATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCT
ATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTAT
TTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAA
ACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATG
GTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAAT
TCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAA
AATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCT
TTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTGAA
CGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATT----------

>CFG235Z.Seq
----------GCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGG
TTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTA
TGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACG
TAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGG
CGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGG
TGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGA
AGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGC
TGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACA
ACAAAGAATGGCTGAACAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAG
ACGATTGCAAAGGAACAGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGA
AGCTCAACGAATAACCCAAACCGGNACTTGCACGTAAAGAGGNC

>CFG235P.Seq
ATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTG
CTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTA
ATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCT
ATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTAT
TTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAA
ACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATG
GTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAAT
TCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAA
AATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCT
TTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTGAA
CGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATT----------GCAGCC
GGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGCTGGTGGTTATATTTCTCGTACT
GCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTACTCGTTATGCTAATCAAGGTTAC
AATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCTAATGAA
GGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGGCAACGGCGCACGTAATTATGCT
CAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGAGATTGGTGATGATATCGCCAAT
ACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGCACGTGAAGTAGGTGATGGAATT
AGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGATGGAGCTGAAGAAACTTGGGTG
AAGAAATATTAAAGGTTATCCTTAATTAAAATTAAAAAAGCACAACAAAGAATGGCTGAA
CAAGAAGAAAGAAGAAGGTTGATGCAAGAAGAAAGTGAAAGAAGACGATTGCAAAGGAAC
AGAGAAAGACAAGAGCCAATTAGAACTTATACAACTGCACAAGAAGCTCAACGAATAACC
CAAACCGGNACTTGCACGTAAAGAGGNC