CFG223 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFG223
Library	CF (Link to library)
Clone ID	CFG223 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16300-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFG2-A/CFG223Q.Seq.d/
Representative seq. ID	CFG223E (Link to Original site)
Representative DNA sequence	>CFG223 (CFG223Q) /CSM/CF/CFG2-A/CFG223Q.Seq.d/ ATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAATGAA TCATTCAAGTAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATTGTGA TGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAATGGGA AACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATT TGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAGTTAA AAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGTGGTGGACCAAATAT CATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTTTTGA GTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATGTAAG ATATTACATTAGAGAATTATTACACGCANTGGATTTTTGTCATTCAAACGGTATCATGCA TAGGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAAGTTGTATCTC ATCGATTGGGGTCTTGCCGAATTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCT TCTNGTCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTT GATATGTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTC CATGGTCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAA TTTTATGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATT GGAAAACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCA GTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTA ACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATA TAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAA AATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAA AATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAA AACAAAAACAAAAACAAAAACAAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	flliieyslhilYSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKEYWNYEALNVKWE TQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKILQNLCGGPNI ITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHAXDFCHSNGIMH RRCtikrydsskkkscissigvlpnfiiqikittlelllvhtkdqnywliwkimiivl icgvlvvcllvcsskkihssmvmiilin*rlrfvqknfmpiinmvslliilslvsl eniqrnhgqdllpkktnilqyqrpltfwknyyvmtqpkdlqeklwnthtlnhylikly nhnnnnny*fpnkklkskikikintntntkikikikikikikiktktktktktktktk tktktktk
Translated Amino Acid sequence (All Frames)	Frame A: ifiidnriqpsyiiirknesfkkkksysksnilckssqtkgilelsfkcmg nsrlnyknrrifrsircqhkqkmcnsietskeederddsskslwwtky hyiicrrstikdtklnfvyqqyrfqtsltnthrfrckilhriitrxgflsfkryha emlnhqtlliikkeklylidwglaefyhpnqdynvrvasxpykgpellvdmedydysl dmwslgcmfagmlfqkdpffhghdnidqlvkivkilgteefyayldkygivvdhtilsii gkhpkkpwsrfitkenqhlavpeaidflekllrydpaerlttreamehpyfkplshiii slk*qlilisqqeikiknqnqnqyqyqyqnqnqnqnqnqnqnqnnnknknknknk nknknknk Frame B: flliieyslhilYSEKMNHSSKKNKNRILRNKARIYCDVNLHKPKEYWNYEALNVKWE TQDDYEIIRKIGRGKYSEVFEGANIKNNEKCVIKVLKPVKKKKIKREIKILQNLCGGPNI ITLYDVVRDPQSKTPSLIFEYINNTDFKHLSPTLTDFDVRYYIRELLHAXDFCHSNGIMH RRCtikrydsskkkscissigvlpnfiiqikittlelllvhtkdqnywliwkimiivl icgvlvvcllvcsskkihssmvmiilinrlrfvqknfmpiinmvslliilslvsl eniqrnhgqdllpkktnilqyqrpltfwknyyvmtqpkdlqeklwnthtlnhylikly nhnnnnnyfpnkklkskikikintntntkikikikikikikiktktktktktktktk tktktktk Frame C: fyyrntafiyyniakkiiqvkkikivfleikleyivmiftnqrnigtmklmlngk lkmimkllekvevniqkylkvptlktmknvlkynqlkrrrlrerlrffkifvvdqis lhymmsleihnqrhqaflsistipisnishqhspismditlenyytxwifviqtvsci gdvkpsnvmidhqkrkvvshrlgscrilssksrlqrscfxsiqrtriigygrlls yveswlyvcwyalpkrsilpws*ysiskdckdfryrrilclfriwyrcsyypyhw ktsketmvkiyyqrkptscstrghlfgkiitlpsrkinykrsygtpiltiislnnyi iiikiittdinfptrn*nqksksksipipipksksksksksksksklklkqkqkqkqkqk qkqkqkqk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFG223 (CFG223Q) /CSM/CF/CFG2-A/CFG223Q.Seq.d/ 2054 0.0 VFB220 (VFB220Q) /CSM/VF/VFB2-A/VFB220Q.Seq.d/ 2014 0.0 SFE882 (SFE882Q) /CSM/SF/SFE8-D/SFE882Q.Seq.d/ 2006 0.0 VFB460 (VFB460Q) /CSM/VF/VFB4-C/VFB460Q.Seq.d/ 2000 0.0 SHL221 (SHL221Q) /CSM/SH/SHL2-A/SHL221Q.Seq.d/ 1963 0.0 VFK554 (VFK554Q) /CSM/VF/VFK5-C/VFK554Q.Seq.d/ 1947 0.0 SFC294 (SFC294Q) /CSM/SF/SFC2-D/SFC294Q.Seq.d/ 1816 0.0 SFD249 (SFD249Q) /CSM/SF/SFD2-C/SFD249Q.Seq.d/ 1098 0.0 SFD426 (SFD426Q) /CSM/SF/SFD4-B/SFD426Q.Seq.d/ 1096 0.0 CHC247 (CHC247Q) /CSM/CH/CHC2-B/CHC247Q.Seq.d/ 1088 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N L05535\|L05535.1 Dictyostelium discoideum casein kinase II alpha subunit mRNA, complete cds. 1055 0.0 4 AC117072\|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 714 0.0 11 CB000454\|CB000454.1 S345Z_A10 Rice cold stress germination cDNA library Oryza sativa (japonica cultivar-group) cDNA 5', mRNA sequence. 64 3e-27 4 AK070271\|AK070271.1 Oryza sativa (japonica cultivar-group) cDNA clone:J023047E06, full insert sequence. 56 4e-26 5 CB659621\|CB659621.1 OSJNEc16M04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc16M04 5', mRNA sequence. 64 9e-24 4 CB657452\|CB657452.1 OSJNEc12M14.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc12M14 5', mRNA sequence. 60 1e-22 4 CB658505\|CB658505.1 OSJNEc14J08.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA clone OSJNEc14J08 5', mRNA sequence. 54 6e-21 4 AY035088\|AY035088.1 Arabidopsis thaliana putative casein kinase II catalytic alpha subunit (F21P24.14/At2g23080) mRNA, complete cds. 70 9e-20 4 AE014837\|AE014837.1 Plasmodium falciparum 3D7 chromosome 11 section 2 of 8 of the complete sequence. 62 3e-19 19 CA818144\|CA818144.1 CA12EI302IIIR_E05 CA12EI Vitis vinifera cDNA clone CA12EI302IIIR_E05 3', mRNA sequence. 44 6e-19 6
dna update	2003.12.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q02720) RecName: Full=Casein kinase II subunit alpha; ... 328 e-169 AC117076_51(AC117076\|pid:none) Dictyostelium discoideum chromoso... 328 e-168 AB036786_1(AB036786\|pid:none) Oryza sativa Indica Group Kasalath... 237 e-119 AP005244_27(AP005244\|pid:none) Oryza sativa Japonica Group genom... 236 e-118 EU284834_1(EU284834\|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 236 e-118 AM440768_1(AM440768\|pid:none) Vitis vinifera contig VV78X184096.... 239 e-118 AC004401_12(AC004401\|pid:none) Arabidopsis thaliana chromosome 2... 243 e-117 AF370308_1(AF370308\|pid:none) Arabidopsis thaliana putative case... 234 e-117 CS402615_1(CS402615\|pid:none) Sequence 5 from Patent WO2006020717. 235 e-117 Y11526_1(Y11526\|pid:none) Z.mays mRNA for casein kinase II alpha... 235 e-117
protein update	2009. 6.30
PSORT	psg: 0.32 gvh: 0.09 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.05 nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 56.0 %: nuclear 36.0 %: cytoplasmic 4.0 %: cytoskeletal 4.0 %: plasma membrane >> prediction for CFG223 is nuc
5' end seq. ID	CFG223F
5' end seq.	>CFG223F.Seq ATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAATGAA TCATTCAAGTAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATTGTGA TGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAATGGGA AACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATT TGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAGTTAA AAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGTGGTGGACCAAATAT CATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTTTTGA GTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATGTAAG ATATTACATTAGAGAATTATTACACGCATTGGATTTTTGTCATTCAAACGGTATCATGCA TAGGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAATTGTATCTCA TCGATTGGGGTCTTGCCGA----------
Length of 5' end seq.	619
3' end seq. ID	CFG223Z
3' end seq.	>CFG223Z.Seq ----------AATTATTACACGCAGTGGATTTTTGTCATTCAAACGGTATCATGCATAGA GATGTTAAACCATCNAACGTTATGATTGATCATCAAAAAAGAAAAGTTGTATCTCATCGA TTGGGGTCTTGCCGAATTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCTTCTNG TCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTTGATAT GTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTCCATGG TCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAATTTTA TGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATTGGAAA ACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCAGTACC AGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTAACTAC AAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATATAATC ATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAAAATCA AAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAAAATCA AAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAA AAACAAAAACAAAAACAAAAA
Length of 3' end seq.	791
Connected seq. ID	CFG223P
Connected seq.	>CFG223P.Seq ATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAATGAA TCATTCAAGTAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATTGTGA TGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAATGGGA AACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATT TGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAGTTAA AAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGTGGTGGACCAAATAT CATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTTTTGA GTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATGTAAG ATATTACATTAGAGAATTATTACACGCATTGGATTTTTGTCATTCAAACGGTATCATGCA TAGGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAATTGTATCTCA TCGATTGGGGTCTTGCCGA----------AATTATTACACGCAGTGGATTTTTGTCATTC AAACGGTATCATGCATAGAGATGTTAAACCATCNAACGTTATGATTGATCATCAAAAAAG AAAAGTTGTATCTCATCGATTGGGGTCTTGCCGAATTTTATCATCCAAATCAAGATTACA ACGTTAGAGTTGCTTCTNGTCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATT ATGATTATAGTCTTGATATGTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAA AAGATCCATTCTTCCATGGTCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTT TAGGTACAGAAGAATTTTATGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTA TCCTTAGTATCATTGGAAAACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAA ACCAACATCTTGCAGTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACC CAGCCGAAAGATTAACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTC ATTAAATAATTATATAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAG AAATTAAAATCAAAAATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATC AAAATCAAAATCAAAATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACA AAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAA
Length of connected seq.	1410
Full length Seq ID	CFG223E
Full length Seq.	>CFG223E.Seq ATTTTTATTATAGATAATAGAATACAGCCTTCATATATTATAATATAGCGAAAAAATGAA TCATTCAAGTAAAAAAAATAAAAATCGTATTCTTAGAAATAAAGCTAGAATATATTGTGA TGTAAATCTTCACAAACCAAAGGAATATTGGAACTATGAAGCTTTAAATGTTAAATGGGA AACTCAAGATGATTATGAAATTATTAGAAAAATAGGTAGAGGTAAATATTCAGAAGTATT TGAAGGTGCCAACATTAAAAACAATGAAAAATGTGTAATTAAAGTATTGAAACCAGTTAA AAAGAAGAAGATTAAGAGAGAGATTAAGATTCTTCAAAATCTTTGTGGTGGACCAAATAT CATTACATTATATGATGTCGTTAGAGATCCACAATCAAAGACACCAAGCTTAATTTTTGA GTATATCAACAATACCGATTTCAAACATCTCTCACCAACACTCACCGATTTCGATGTAAG ATATTACATTAGAGAATTATTACACGCANTGGATTTTTGTCATTCAAACGGTATCATGCA TAGGAGATGTTAAACCATCAAACGTTATGATTGATCATCAAAAAAGAAAAGTTGTATCTC ATCGATTGGGGTCTTGCCGAATTTTATCATCCAAATCAAGATTACAACGTTAGAGTTGCT TCTNGTCCATACAAAGGACCAGAATTATTGGTTGATATGGAAGATTATGATTATAGTCTT GATATGTGGAGTCTTGGTTGTATGTTTGCTGGTATGCTCTTCCAAAAAGATCCATTCTTC CATGGTCATGATAATATTGATCAATTAGTAAAGATTGTAAAGATTTTAGGTACAGAAGAA TTTTATGCCTATTTAGATAAATATGGTATCGTTGTTGATCATACTATCCTTAGTATCATT GGAAAACATCCAAAGAAACCATGGTCAAGATTTATTACCAAAGAAAACCAACATCTTGCA GTACCAGAGGCCATTGACTTTTTGGAAAAATTATTACGTTATGACCCAGCCGAAAGATTA ACTACAAGAGAAGCTATGGAACACCCATACTTTAAACCATTATCTCATTAAATAATTATA TAATCATAATTAAAATAATAACAACTGATATTAATTTCCCAACAAGAAATTAAAATCAAA AATCAAAATCAAAATCAATACCAATACCAATACCAAAATCAAAATCAAAATCAAAATCAA AATCAAAATCAAAATCAAAACTAAAACTAAAACAAAAACAAAAACAAAAACAAAAACAAA AACAAAAACAAAAACAAAAACAAAAA
Length of full length seq.	1286

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas