CFG218
Library CF
(Link to library)
Clone ID CFG218
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15614-1
Original site URL
Representative seq. ID CFG218F
(Link to Original site)
Representative DNA sequence
>CFG218 (CFG218Q) /CSM/CF/CFG2-A/CFG218Q.Seq.d/
AAATACAATAAACAATCAAATAACACAAATACATATAATTTAAATTCAAAAAAAATAATA
GAATTAAATACAGTAATTTTTTTTGTATTTTTATATCTATCATTCATACTTTAAAAAAAA
AAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
KYNKQSNNTNTYNLNSKKIIELNTVIFFVFLYLSFIL*kk---


Translated Amino Acid sequence (All Frames)
Frame A:
KYNKQSNNTNTYNLNSKKIIELNTVIFFVFLYLSFIL*kk---


Frame B:
ntinnqitqihii*iqkk**n*iq*fflyfyiyhsyfkkk---


Frame C:
iq*tik*hkyi*fkfkknnrikysnffcifisiihtlkk---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK575 (SFK575Q) /CSM/SF/SFK5-D/SFK575Q.Seq.d/ 127 4e-29
CFI616 (CFI616Q) /CSM/CF/CFI6-A/CFI616Q.Seq.d/ 127 4e-29
CFG218 (CFG218Q) /CSM/CF/CFG2-A/CFG218Q.Seq.d/ 127 4e-29
AFO563 (AFO563Q) /CSM/AF/AFO5-C/AFO563Q.Seq.d/ 127 4e-29
AFI437 (AFI437Q) /CSM/AF/AFI4-B/AFI437Q.Seq.d/ 127 4e-29
SFH638 (SFH638Q) /CSM/SF/SFH6-B/SFH638Q.Seq.d/ 115 2e-25
AFM452 (AFM452Q) /CSM/AF/AFM4-C/AFM452Q.Seq.d/ 115 2e-25
SFJ170 (SFJ170Q) /CSM/SF/SFJ1-C/SFJ170Q.Seq.d/ 103 6e-22
SLA332 (SLA332Q) /CSM/SL/SLA3-B/SLA332Q.Seq.d/ 100 9e-21
SSA750 (SSA750Q) /CSM/SS/SSA7-C/SSA750Q.Seq.d/ 66 1e-10

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AL121766|AL121766.5 Human chromosome 14 DNA sequence BAC R-412H8 of library RPCI-11 from chromosome 14 of Homo sapiens (Human). 34 0.004 7
BX005364|BX005364.9 Zebrafish DNA sequence from clone DKEY-222L20. 38 0.013 6
AL929184|AL929184.7 Zebrafish DNA sequence from clone CH211-125N20. 34 0.044 5
AZ678477|AZ678477.1 ENTMS22TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, genomic survey sequence. 42 0.19 2
AE014833|AE014833.1 Plasmodium falciparum 3D7 chromosome 10 section 5 of 7 of the complete sequence. 30 0.30 8
AC027004|AC027004.15 Homo sapiens chromosome 15, clone RP11-143C19, complete sequence. 34 0.30 4
AC102132|AC102132.3 Mus musculus, clone RP23-231D1, complete sequence. 44 0.44 1
CC225855|CC225855.1 CH261-7E12_Sp6.2 CH261 Gallus gallus genomic clone CH261-7E12, DNA sequence. 44 0.44 1
AC144971|AC144971.1 Silurana tropicalis clone ISB-372E6, WORKING DRAFT SEQUENCE, 2 unordered pieces. 44 0.44 1
BX294129|BX294129.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-34H12. 36 0.50 5
dna update 2004. 3. 7
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 102,893,730
protein update 2009. 5.14
PSORT

psg: 0.66 gvh: 0.40 alm: 0.28 top: 0.47 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.53 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
12.0 %: Golgi
12.0 %: nuclear
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for CFG218 is mit

5' end seq. ID CFG218F
5' end seq.
>CFG218F.Seq
AAATACAATAAACAATCAAATAACACAAATACATATAATTTAAATTCAAAAAAAATAATA
GAATTAAATACAGTAATTTTTTTTGTATTTTTATATCTATCATTCATACTTTAAAAAAAA
AA----------
Length of 5' end seq. 122
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -